geo_download: geo_download

In tinyarray: Expression Data Analysis and Visualization

geo_download

Description

download gse data and get informations

Usage

geo_download(
  gse,
  by_annopbrobe = TRUE,
  simpd = TRUE,
  colon_remove = FALSE,
  destdir = getwd(),
  n = 1
)

Arguments

gse	gse assession number
by_annopbrobe	download data by geoquery or annoprobe
simpd	get simplified pdata,drop out columns with all same values
colon_remove	whether to remove duplicated columns with colons
destdir	The destination directory for data downloads.
n	For data with more than one ExpressionSet, specify which one to analyze

Value

a list with exp,pd and gpl

Author(s)

Xiaojie Sun

See Also

find_anno

Examples

## Not run: 
gse = "GSE42872"
a = geo_download(gse,destdir=tempdir())

## End(Not run)

tinyarray documentation built on Aug. 18, 2023, 9:07 a.m.