get_count_txt: get count from GEO
In tinyarray: Expression Data Analysis and Visualization
get_count_txt R Documentation
get count from GEO
Description
get RNA-seq count file from GEO database
Usage
get_count_txt(gse, destdir = getwd(), download = FALSE)
Arguments
gse
GEO accession number or a path to a cached '.rds' or '.RData'
file containing an 'ExpressionSet' or a list of 'ExpressionSet' objects
destdir
The destination directory for data downloads
download
download the txt file or not
Value
No return value. When 'download = TRUE', the count file is saved in
'destdir'.
Author(s)
Xiaojie Sun
See Also
geo_download
Examples
get_count_txt("GSE162550",destdir = tempdir())
tinyarray documentation built on Aug. 2, 2026, 9:07 a.m.
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| get_count_txt | R Documentation |
get count from GEO
Description
get RNA-seq count file from GEO database
Usage
get_count_txt(gse, destdir = getwd(), download = FALSE)
Arguments
gse |
GEO accession number or a path to a cached '.rds' or '.RData' file containing an 'ExpressionSet' or a list of 'ExpressionSet' objects |
destdir |
The destination directory for data downloads |
download |
download the txt file or not |
Value
No return value. When 'download = TRUE', the count file is saved in 'destdir'.
Author(s)
Xiaojie Sun
See Also
geo_download
Examples
get_count_txt("GSE162550",destdir = tempdir())
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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