geo_parser: geo_parser
In tinyarray: Expression Data Analysis and Visualization

View source: R/tmp.R View source: R/2_geo_id.R

geo_parser

R Documentation

geo_parser

Description

download gse data and get informations

Usage

geo_parser(gse, destdir = getwd())

geo_parser(gse, destdir = getwd())

Arguments

`gse`	gse assession number
`destdir`	The destination directory for data downloads

Value

an ExpressionSet object list

Author(s)

Xiaojie Sun

Examples

## Not run: 
if(requireNamespace("GEOquery",quietly = TRUE)){
  gse = "GSE42872"
  a = geo_download(gse,destdir=tempdir())
}else{
  print("Package 'GEOquery' needed for this function to work.
         Please install it by BiocManager::install('GEOquery')")
}

## End(Not run)
## Not run: 
if(requireNamespace("GEOquery",quietly = TRUE)){
  gse = "GSE42872"
  a = geo_download(gse,destdir=tempdir())
}else{
  print("Package 'GEOquery' needed for this function to work.
         Please install it by BiocManager::install('GEOquery')")
}

## End(Not run)

tinyarray documentation built on April 4, 2025, 1:52 a.m.