topologyGSA: Gene Set Analysis Exploiting Pathway Topology
Version 1.4.6

Using Gaussian graphical models we propose a novel approach to perform pathway analysis using gene expression. Given the structure of a graph (a pathway) we introduce two statistical tests to compare the mean and the concentration matrices between two groups. Specifically, these tests can be performed on the graph and on its connected components (cliques).

Getting started

Package details

AuthorSofia Massa, Gabriele Sales
Date of publication2016-09-22 16:51:06
MaintainerGabriele Sales <gabriele.sales@unipd.it>
LicenseGPL-3
Version1.4.6
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("topologyGSA")

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topologyGSA documentation built on May 29, 2017, 6:59 p.m.