dag_bcell: DAG representation of the B cell receptor signaling pathway
In topologyGSA: Gene Set Analysis Exploiting Pathway Topology
dag_bcell R Documentation
DAG representation of the B cell receptor signaling pathway
Description
The B cell receptor signaling pathway (BCR) converted to a DAG. In case of nodes with multiple genes, the most differentially expressed
between groups of patients defined in y1 (acute lymphocytic leukemia patients
with BCR/ABL gene rearrangement) and y2 (acute lymphocytic leukemia patients
with BCR/ABL gene rearrangement) matrices.
Chiaretti S., Li X., Gentleman R., Vitale A., Wang K.S., Mandelli F., Fo R., Ritz J. (2005) Gene expression
profiles of B-lineage adult acute lymphocytic leukemia reveal genetic patterns that identify lineage derivation
and distinct mechanisms of transformation. Clin Cancer Res, 11:7209-7219.
https://aacrjournals.org/clincancerres/article/11/20/7209/188537/Gene-Expression-Profiles-of-B-lineage-Adult-Acute
Massa, M.S., Chiogna, M., Romualdi, C. (2010). Gene set analysis exploiting the topology of a pathway. BMC Systems Biology, 4:121
https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-4-121
topologyGSA documentation built on Sept. 26, 2023, 1:05 a.m.
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| dag_bcell | R Documentation |
DAG representation of the B cell receptor signaling pathway
Description
The B cell receptor signaling pathway (BCR) converted to a DAG. In case of nodes with multiple genes, the most differentially expressed between groups of patients defined in y1 (acute lymphocytic leukemia patients with BCR/ABL gene rearrangement) and y2 (acute lymphocytic leukemia patients with BCR/ABL gene rearrangement) matrices.
Chiaretti S., Li X., Gentleman R., Vitale A., Wang K.S., Mandelli F., Fo R., Ritz J. (2005) Gene expression profiles of B-lineage adult acute lymphocytic leukemia reveal genetic patterns that identify lineage derivation and distinct mechanisms of transformation. Clin Cancer Res, 11:7209-7219. https://aacrjournals.org/clincancerres/article/11/20/7209/188537/Gene-Expression-Profiles-of-B-lineage-Adult-Acute
Massa, M.S., Chiogna, M., Romualdi, C. (2010). Gene set analysis exploiting the topology of a pathway. BMC Systems Biology, 4:121 https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-4-121
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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