render.significant.cliques: Graphical display of the significant cliques

Description Usage Arguments References See Also Examples

View source: R/render.R

Description

This function highlights the significant cliques on the moralized and triangulated graph. Different colors correspond to different values of -log(pvalue)

Usage

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Arguments

info

the result of clique.var.test or clique.mean.test.

alpha

p-value cutoff to define significant cliques

References

Massa, M.S., Chiogna, M., Romualdi, C. (2010). Gene set analysis exploiting the topology of a pathway. BMC Systems Biology, 4:121 http://www.biomedcentral.com/1752-0509/4/121

See Also

clique.var.test, clique.mean.test.

Examples

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data(examples)

info <- clique.var.test(y1, y2, dag_bcell, 0.1)
## Not run: render.significant.cliques(info)

topologyGSA documentation built on May 2, 2019, 5:56 a.m.