API for topr
Create Custom Plots for Viewing Genetic Association Results
| Global functions | |
|---|---|
| %>% | Man page |
| CD_FINNGEN | Man page |
| CD_UKBB | Man page |
| R2_CD_UKBB | Man page |
| UC_UKBB | Man page |
| add_annot | Source code |
| add_annotation | Source code |
| add_genes2plot | Source code |
| add_log10p_wo_trans | Source code |
| add_rsids | Source code |
| add_shades_and_ticks | Source code |
| add_sign_thresh | Source code |
| add_sign_thresh_labels | Source code |
| add_title | Source code |
| add_vline | Source code |
| add_zero_hline | Source code |
| add_zoom_rectangle | Source code |
| annotate_with_nearest_gene | Man page Source code |
| change_axes | Source code |
| convert_chrs_to_numeric | Source code |
| convert_region_size | Source code |
| create_snpset | Man page Source code |
| create_snpset_code | Man page Source code |
| dat_check | Source code |
| dat_column_check_and_set | Source code |
| dat_column_chr_pos_check | Source code |
| deprecated_argument_msg | Source code |
| downsample | Source code |
| draw_plots_with_egg | Source code |
| effect_plot | Man page Source code |
| effectplot | Man page Source code |
| filter_on_chr | Source code |
| filter_on_xmin_xmax | Source code |
| flip_to_positive_allele_for_dat1 | Man page Source code |
| format_P | Source code |
| get_annotation | Source code |
| get_base_plot | Source code |
| get_best_snp_per_MB | Man page Source code |
| get_chr_from_df | Source code |
| get_chr_lengths_and_offsets | Source code |
| get_chr_lightness | Source code |
| get_chrs_from_data | Source code |
| get_db | Source code |
| get_exonplot_coords | Source code |
| get_exons | Source code |
| get_gene | Man page Source code |
| get_gene_coords | Man page Source code |
| get_gene_plot | Source code |
| get_geneplot_coords | Source code |
| get_genes | Source code |
| get_genes_by_Gene_Symbol | Man page Source code |
| get_genes_in_region | Man page Source code |
| get_lead_snps | Man page Source code |
| get_legend | Source code |
| get_main_LD_snp | Source code |
| get_max_value_by_chr_from_data | Source code |
| get_overlapping_snps_by_pos | Man page Source code |
| get_pos_with_offset | Source code |
| get_pos_with_offset4list | Source code |
| get_rsids_from_df | Source code |
| get_shades | Source code |
| get_sign_and_sugg_loci | Man page Source code |
| get_snps_within_region | Man page Source code |
| get_snpset | Man page Source code |
| get_snpset_code | Man page Source code |
| get_ticks | Source code |
| get_top_snp | Man page Source code |
| get_topr_colors | Man page Source code |
| get_x1_x2 | Source code |
| get_ymax | Source code |
| get_ymin | Source code |
| include_chrX | Source code |
| is_df_empty | Source code |
| lightness | Source code |
| locuszoom | Man page Source code |
| manhattan | Man page Source code |
| manhattanExtra | Man page Source code |
| match_alleles | Man page Source code |
| match_by_alleles | Man page Source code |
| match_by_pos | Man page Source code |
| plot_exons | Source code |
| qqtopr | Man page Source code |
| regionplot | Man page Source code |
| rename_value | Source code |
| rm_axis_text_and_ticks | Source code |
| rm_chr_prefix_and_sort | Source code |
| rm_grids | Source code |
| set_alpha | Source code |
| set_annotate | Source code |
| set_axis_labels | Source code |
| set_color | Source code |
| set_genes_pos_adj | Source code |
| set_legend_texts | Source code |
| set_log10p | Source code |
| set_lz_colors | Source code |
| set_plot_text_sizes | Source code |
| set_shape | Source code |
| set_shape_by_impact | Source code |
| set_size | Source code |
| set_size_shape_alpha | Source code |
| set_xmin_xmax | Source code |
| set_xmin_xmax_ymin_ymax | Source code |
| set_ymin_ymax | Source code |
| topr | Man page |
| topr-package | Man page |
