CD_FINNGEN | R Documentation |
Dataset retrieved from the Finngen database (version 7) including 3147 crohn´s cases (K50) and 296,100 controls. The dataset has been filtered on variants with P <1e-03. FinnGen data are publicly available and were downloaded from https://finngen.fi.
CD_FINNGEN
A data frame with 32,303 rows and 8 variables:
Chromosome, written as for example chr1 or 1
genetic position of the variant
the reference allele
the alternative allele
P-value from Plink run, additive model, regression model GLM_FIRTH
Variant effect
Variant identifier, e.g. rsid
Allele frequency
Crohn's K50 (K11_CROHNS), only including variants with P<1e-03
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