get_snps_within_region: Get SNPs/variants within region

In topr: Create Custom Plots for Viewing Genetic Association Results

Get SNPs/variants within region

Description

get_snps_within_region()

Usage

get_snps_within_region(
  df,
  region,
  chr = NULL,
  xmin = NULL,
  xmax = NULL,
  keep_chr = NULL
)

Arguments

df	data frame of association results with the columns CHR and POS
region	A string representing the genetic region (e.g chr16:50693587-50734041)
chr	A string, chromosome (e.g. chr16)
xmin	An integer, include variants with POS larger than xmin
xmax	An integer, include variants with POS smaller than xmax
keep_chr	Deprecated: Logical, set to FALSE to remove the "chr" prefix before each chromosome if present (TRUE by default)

Value

the variants within the requested region

Examples

## Not run: 
get_snps_within_region(CD_UKBB, "chr16:50593587-50834041")

## End(Not run)

topr documentation built on June 22, 2024, 9:59 a.m.