transPlotWR: Plots transport profiles of replicated experiments
In transmem: Treatment of Membrane-Transport Data

Description Usage Arguments Details Value Author(s) References Examples

The function works the same way as transPlot but requires several experimental data sets that must be concatenated in lists. This allows the process reproducibility to be evaluated in the analysis of the results.

transPlotWR(trans, trend = NULL, secondary = NULL, tertiary = NULL,
  legend = FALSE, xlab = "Time (h)", ylab = expression(Phi),
  xlim = NULL, ylim = NULL, xbreaks = NULL, ybreaks = NULL,
  lin.secon = FALSE, sec.trend = "spline", span = 0.75,
  explicit = FALSE, size = 3, plot = TRUE, bw = FALSE, srs = NULL)

`trans`	List of data frames with the complete transport information of interest species. Must be generated using `conc2frac`. This is the only non-optional parameter.
`trend`	List of Non-linear regression models of the main species transport profil. Generated using `transTrend`.
`secondary`	List of secondary species transport data frame (see `conc2frac`).
`tertiary`	List of tertiary species transport data frame (see `conc2frac`).
`legend`	Logical. If `FALSE`, the default, the legend is not included.
`xlab`	Label to be used for x axis. Text and expression allowed.
`ylab`	Label to be used for y axis. Text and expression allowed.
`xlim`	Numeric vector of limits for X-axis.
`ylim`	Numeric vector of limits for X-axis.
`xbreaks`	Numeric vector of x-axis breaks.
`ybreaks`	Numeric vector of x-axis breaks.
`lin.secon`	Deprecated. Use `sec.trend = 'linear'` instead.
`sec.trend`	Type of trend line to be used for secondary and tertiary species data. Default is `'spline'` but `'linear'`, `'loess'` and `'logarithmic'` are also allowed.
`span`	Amount of smoothing when `sec.tred = 'loess'`. Is a value between 0 and 1. Default is 0.75
`explicit`	Logical, if `FALSE`, the default, transport informations are averaged and plotted using errorbars that with the standard deviation values. If `TRUE`, all provided data is plotted in the same graphic.
`size`	Size used for points in the plot.
`plot`	Logical. If `TRUE`, the default, the plot is printed in the current graphical device.
`bw`	Logical, if `FALSE`, the default, a color version of the plot is given. If a black and white version is required, it must be set to `TRUE`.
`srs`	Deprecated.

Most transmem graphical representations are made using the package ggplot2 so the function returns a ggplot2 object that can be assigned to a variable for further modification.

Plot of replicated transport profiles including all provided species

Cristhian Paredes, craparedesca@unal.edu.co

Eduardo Rodriguez de San Miguel, erdsmg@unam.mx

Wickham H (2016). ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York. ISBN 978-3-319-24277-4, https://ggplot2.tidyverse.org.

  data(seawaterLiNaK)
  # Transport data frames and transport NLS regresions must be in lists
  lithium   <- list(seawaterLiNaK$Lithium.1, seawaterLiNaK$Lithium.2)
  sodium    <- list(seawaterLiNaK$Sodium.1, seawaterLiNaK$Sodium.2)
  potassium <- list(seawaterLiNaK$Potassium.1, seawaterLiNaK$Potassium.2)
  trend     <- list(transTrend(trans = seawaterLiNaK$Lithium.1),
                    transTrend(trans = seawaterLiNaK$Lithium.2))

  transPlotWR(trans = lithium, trend = trend, secondary = sodium,
              tertiary = potassium, bw = TRUE)