genera_strippR: Check if tip is on tree

In treestartr: Generate Starting Trees for Combined Molecular, Morphological and Stratigraphic Data

Description

Test which taxa in the total set of taxa are present on the tree, and which need to be added. The tax_frame object is assumed to be a dataframe, minimally with a column labeled "taxon". If this column does not exist, the first column in the dataframe will be assumed to contain the taxon information.

Usage

genera_strippr(tree, tax_frame)

Arguments

tree	Starting phylogeny, of type phylo
tax_frame	Total set of taxa on tree, as dataframe.

Value

absent_list of taxa that are present in the total set of trees, but not the starting tree

Examples

absent_taxa <- genera_strippr(tree, tax_frame = tax_frame)

treestartr documentation built on May 1, 2019, 8:03 p.m.