rand_absent_tippR: Random addition of taxa

In treestartr: Generate Starting Trees for Combined Molecular, Morphological and Stratigraphic Data

Description

Add tips not on existing tree to the tree at random, if they do not have congeners on the tree.

Usage

rand_absent_tippr(tree, absent_list, echo_subtrees = NULL,
  echo_revbayes = NULL)

Arguments

tree	Starting tree; object of type phylo
absent_list	Vector of taxa in the total dataset that are not on the tree
echo_subtrees	Boolean; Print newick subtree with missing taxa added to screen. Default FALSE.
echo_revbayes	Boolean; Print clade constraints with missing taxa added to screen, formatted for RevBayes fossilized birth-death analysis. Default FALSE.

Value

tree Phylo object containing the starting tree, and all tips that were added.

Examples

new_tree <- rand_absent_tippr(tree, absent_list)

treestartr documentation built on May 1, 2019, 8:03 p.m.