calc_topology_stats: Calculate all topology based statistics for a single tree

In treestats: Phylogenetic Tree Statistics

Calculate all topology based statistics for a single tree

Description

this function calculates all tree statistics based on topology available in this package for a single tree, being:

• area_per_pair

• average_leaf_depth

• avg_ladder

• avg_vert_depth

• b1

• b2

• beta

• blum

• cherries

• colless

• colless_corr

• colless_quad

• diameter

• double_cherries

• eigen_centrality

• ew_colless

• four_prong

• i_stat

• il_number

• imbalance_steps

• j_one

• max_betweenness

• max_closeness

• max_del_width

• max_depth

• max_ladder

• max_width

• mw_over_md

• pitchforks

• rogers

• root_imbalance

• rquartet

• sackin

• stairs

• stairs2

• symmetry_nodes

• tot_coph

• tot_internal_path

• tot_path_length

• var_depth

Usage

calc_topology_stats(phylo, normalize = FALSE)

Arguments

phylo	phylo object
normalize	if set to TRUE, results are normalized (if possible) under either the Yule expectation (if available), or the number of tips

Value

list with statistics

treestats documentation built on Sept. 14, 2024, 9:08 a.m.