ttScreening: Genome-wide DNA methylation sites screening by use of training and testing samples.

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This package utilizes training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

Author
Meredith Ray, Xin Tong, Hongmei Zhang
Date of publication
2014-11-14 18:18:24
Maintainer
Meredith Ray <mere2110@yahoo.com>
License
Artistic-2.0
Version
1.5

View on CRAN

Man pages

irwsva.build2
Adjusted irwsva.build which builds surrogate variables from...
num.sv2
Adjusted num.sv which estimates the number of important...
sva2
The adjusted sva code using irwsva.build2
ttScreening
A screening process built upon training and testing samples
ttScreening-package
Genome-wide DNA methylation sites screening by use of...

Files in this package

ttScreening
ttScreening/NAMESPACE
ttScreening/R
ttScreening/R/ttScreening.R
ttScreening/R/num.sv2.R
ttScreening/R/irwsva.build2.R
ttScreening/R/sva2.R
ttScreening/MD5
ttScreening/DESCRIPTION
ttScreening/man
ttScreening/man/irwsva.build2.Rd
ttScreening/man/ttScreening.Rd
ttScreening/man/ttScreening-package.Rd
ttScreening/man/num.sv2.Rd
ttScreening/man/sva2.Rd