ttScreening: Genome-wide DNA methylation sites screening by use of training and testing samples.
Version 1.5

This package utilizes training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

AuthorMeredith Ray, Xin Tong, Hongmei Zhang
Date of publication2014-11-14 18:18:24
MaintainerMeredith Ray <mere2110@yahoo.com>
LicenseArtistic-2.0
Version1.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ttScreening")

Getting started

Package overview

Popular man pages

irwsva.build2: Adjusted irwsva.build which builds surrogate variables from...
num.sv2: Adjusted num.sv which estimates the number of important...
sva2: The adjusted sva code using irwsva.build2
ttScreening: A screening process built upon training and testing samples
ttScreening-package: Genome-wide DNA methylation sites screening by use of...
See all...

All man pages Function index File listing

Man pages

irwsva.build2: Adjusted irwsva.build which builds surrogate variables from...
num.sv2: Adjusted num.sv which estimates the number of important...
sva2: The adjusted sva code using irwsva.build2
ttScreening: A screening process built upon training and testing samples
ttScreening-package: Genome-wide DNA methylation sites screening by use of...

Functions

irwsva.build2 Man page Source code
num.sv2 Man page Source code
sva2 Man page Source code
ttScreening Man page Source code
ttScreening-package Man page

Files

NAMESPACE
R
R/ttScreening.R
R/num.sv2.R
R/irwsva.build2.R
R/sva2.R
MD5
DESCRIPTION
man
man/irwsva.build2.Rd
man/ttScreening.Rd
man/ttScreening-package.Rd
man/num.sv2.Rd
man/sva2.Rd
ttScreening documentation built on May 19, 2017, 7:36 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.