R/0_imports.R

In tune: Tidy Tuning Tools

#' @importFrom dplyr filter select full_join mutate bind_rows case_when vars
#' @importFrom dplyr all_of ungroup slice bind_cols pull sample_n desc anti_join
#' @importFrom dplyr distinct arrange rename mutate_if starts_with inner_join
#' @importFrom dplyr last
#' @importFrom purrr map_int
#' @importFrom rlang call2 ns_env is_quosure is_quosures quo_get_expr call_name
#' @importFrom rlang is_false eval_tidy expr sym syms env_get is_function :=
#' @importFrom rlang is_missing %||% caller_env
#' @importFrom glue glue glue_collapse
#' @importFrom dials is_unknown encode_unit
#' @importFrom stats sd qt qnorm dnorm pnorm predict model.matrix setNames
#' @importFrom stats model.matrix model.response model.frame update median
#' @importFrom yardstick rsq rmse accuracy roc_auc brier_survival brier_class
#' @importFrom tidyr unnest nest
#' @importFrom GPfit GP_fit
#' @importFrom parsnip get_from_env required_pkgs
#' @importFrom recipes all_predictors all_outcomes
#' @importFrom ggplot2 ggplot aes xlab geom_point geom_errorbar facet_wrap ylab
#' @importFrom ggplot2 facet_grid geom_line aes_string aes_ scale_x_continuous
#' @importFrom cli cli_alert_danger cli_alert_info cli_alert_warning
#' @importFrom cli cli_alert_success cli_alert
#' @importFrom cli cli_inform cli_warn cli_abort qty
#' @importFrom tibble obj_sum size_sum
#' @import rlang

# ------------------------------------------------------------------------------
# Only a small number of functions in workflows.
# It is worth just importing everything.

#' @import workflows

# ------------------------------------------------------------------------------

utils::globalVariables(
  c(
    ".",
    "engine",
    "name",
    "func",
    "parsnip",
    "call_name",
    ".step",
    "call_info",
    "component",
    "component_id",
    "id",
    "control",
    ".pred",
    ".metric",
    ".estimator",
    ".estimate",
    "n",
    "note",
    "object",
    "splits",
    "grid",
    "resamples",
    ".iter",
    "mean",
    ".submodels",
    "metrics",
    "data",
    ".mean",
    ".sd",
    "iteration",
    "pkg",
    ".pred_class",
    "std_err",
    "const",
    "objective",
    "delta",
    "sd_trunc",
    "snr",
    "z",
    "..val",
    "max_val",
    "has_submodel",
    "res",
    ".extracts",
    ".metrics",
    "value",
    ".notes",
    ".loss",
    ".bound",
    ".column",
    ".totals",
    ".value",
    "direction",
    ".config",
    "Freq",
    "Prediction",
    "Truth",
    ".seed",
    ".order",
    ".iter_model",
    ".iter_preprocessor",
    ".iter_config",
    ".msg_model",
    "# resamples",
    "seed",
    "pre",
    "type",
    "rowwise",
    ".best",
    "location",
    "msg",
    "..object",
    ".eval_time",
    ".pred_survival",
    ".pred_time",
    ".weight_censored",
    "nice_time",
    "time_metric",
    ".lower",
    ".upper",
    "i",
    "results",
    "term",
    ".alpha",
    ".method",
    "old_term",
    ".lab_pre",
    ".model",
    ".num_models",
    "model_stage",
    "predict_stage",
    "user",
    "num"
  )
)

# ------------------------------------------------------------------------------

release_bullets <- function() {
  c(
    "**Do this before checks!**. Update dependencies with `devtools::install_dev_deps()` and update the test objects via `R CMD BATCH --vanilla inst/test_objects.R`."
  )
}

# ------------------------------------------------------------------------------
# data on model prediction types

# Will predictions have one value per row and should be in a list column?
dyn_surv_types <- c("survival", "hazard")
dyn_quant_types <- "quantile"
dyn_types <- c(dyn_surv_types, dyn_quant_types)