chrom_to_vcfR: Convert chrom objects to vcfR objects
In vcfR: Manipulate and Visualize VCF Data
chromR2vcfR R Documentation
Convert chrom objects to vcfR objects
Description
Convert chrom objects to vcfR objects.
Usage
chromR2vcfR(x, use.mask = FALSE)
Arguments
x
Object of class chrom
use.mask
Logical, determine if mask from chrom object should be used to subset vcf data
Details
The chrom object is subset and recast as a vcfR object. When use.mask is set
to TRUE (the default), the object is subset to only the variants (rows) indicated
to include by the mask. When use.mask is set to FALSE, all variants (rows) from
the chrom object are included in the new vcfR object.
Value
Returns an object of class vcfR.
vcfR documentation built on Feb. 16, 2023, 8:12 p.m.
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| chromR2vcfR | R Documentation |
Convert chrom objects to vcfR objects
Description
Convert chrom objects to vcfR objects.
Usage
chromR2vcfR(x, use.mask = FALSE)
Arguments
x |
Object of class chrom |
use.mask |
Logical, determine if mask from chrom object should be used to subset vcf data |
Details
The chrom object is subset and recast as a vcfR object. When use.mask is set to TRUE (the default), the object is subset to only the variants (rows) indicated to include by the mask. When use.mask is set to FALSE, all variants (rows) from the chrom object are included in the new vcfR object.
Value
Returns an object of class vcfR.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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