vep: Example data from the Variant Effect Predictor (VEP).
In vcfR: Manipulate and Visualize VCF Data
vep R Documentation
Example data from the Variant Effect Predictor (VEP).
Description
Example data to use with unit tests.
Format
A vcfR object
Details
vep vcfR object
Output from the VEP may include values with multiple equals signs.
This does not appear to conform with the VCF specification (at the time of writing this VCF v4.3).
But it appears fairly easy to accomodate.
This example data can be used to make unit tests to validate functionality.
Examples
data(vep)
vcfR2tidy(vep, info_only = TRUE)$fix
vcfR documentation built on Feb. 16, 2023, 8:12 p.m.
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| vep | R Documentation |
Example data from the Variant Effect Predictor (VEP).
Description
Example data to use with unit tests.
Format
A vcfR object
Details
vep vcfR object
Output from the VEP may include values with multiple equals signs. This does not appear to conform with the VCF specification (at the time of writing this VCF v4.3). But it appears fairly easy to accomodate. This example data can be used to make unit tests to validate functionality.
Examples
data(vep) vcfR2tidy(vep, info_only = TRUE)$fix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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