Files in vcfR
Manipulate and Visualize VCF Data

inst
inst/CITATION
inst/doc
inst/doc/converting_data.Rmd
inst/doc/intro_to_vcfR.html
inst/doc/visualization_1.R inst/doc/filtering_data.R
inst/doc/vcf_data.html
inst/doc/visualization_1.Rmd inst/doc/converting_data.R
inst/doc/visualization_2.html
inst/doc/ranking_data.Rmd
inst/doc/workflow.html
inst/doc/intro_to_vcfR.Rmd
inst/doc/sequence_coverage.html
inst/doc/filtering_data.html
inst/doc/ranking_data.html
inst/doc/sequence_coverage.Rmd inst/doc/visualization_2.Rmd inst/doc/visualization_2.R
inst/doc/converting_data.html
inst/doc/workflow.Rmd inst/doc/ranking_data.R inst/doc/vcf_data.Rmd inst/doc/sequence_coverage.R inst/doc/intro_to_vcfR.R
inst/doc/visualization_1.html
inst/doc/vcf_data.R inst/doc/filtering_data.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test_drplot.R tests/testthat/test_get.R tests/testthat/test_1_vcf.R tests/testthat/test_is_het.R tests/testthat/test_proc_chromR.R tests/testthat/test_vcfRtidy.R tests/testthat/test_freq_peak.R tests/testthat/test_chromoqc.R tests/testthat/test_addID.R tests/testthat/test_conversion.R tests/testthat/test_4_vcfR2DNAbin.R tests/testthat/test_vcfR_methods.R tests/testthat/test_io.R tests/testthat/test_heatmapbp.R tests/testthat/test_genotype_matrix_functions.R tests/testthat/test_chromR_method.R tests/testthat/test_3_extract_gt.R tests/testthat/test_chromo_plot.R tests/testthat/test_10_write_vcf.R tests/testthat/test_var_window.R tests/testthat/test_maf.R tests/testthat/test_genetic_diff.R tests/testthat/test_ad_frequency.R tests/testthat/test_rank_variants.R tests/testthat/test_2_chromR.R
src
src/NM2winNM.cpp
src/Makevars
src/is_het.cpp
src/vcfRCommon.h
src/gt_to_popsum.cpp
src/extractGT2NM.cpp
src/ad_frequency.cpp
src/rank_variants.cpp
src/pair_sort.cpp
src/var_window.cpp
src/vcfRCommon.cpp
src/masplit.cpp
src/Makevars.win
src/init.c
src/RcppExports.cpp
src/seq_to_rects.cpp
src/vcf_io.cpp
src/freq_peak.cpp
NAMESPACE
data
data/vcfR_example.rdata
data/vcfR_test.RData
R
R/chromR-method.R R/query_gt.R R/vcfR-method.R R/addID.R R/sandbox.R R/extract_gt.R R/ordisample.R R/vcfR_to_tidy_functions.R R/AllClass.R R/get_methods.R R/chromo_plot.R R/fasta_output.R R/is_het.R R/onUnload.R R/heatmap_bp.R R/vcfR_conversion.R R/windowing.R R/chromR_functions.R R/RcppExports.R R/ranking.R R/queryMETA.R R/proc_chromR.R R/summary_tables.R R/genetic_diff.R R/genotype_matrix_functions.R R/vcfR_example.R R/vcfR_test.R R/vcfR2DNAbin.R R/io_vcfR.R R/maf.R R/drplot.R R/chromR_to_vcfR.R R/create_chromR.R R/zzz.R R/vcfR.R R/INFO2df.R
vignettes
vignettes/converting_data.Rmd vignettes/visualization_1.Rmd
vignettes/vcfR_flowchart.png
vignettes/ranking_data.Rmd vignettes/intro_to_vcfR.Rmd vignettes/sequence_coverage.Rmd vignettes/visualization_2.Rmd vignettes/workflow.Rmd
vignettes/vcfR_flowchart.dia
vignettes/vcf_data.Rmd vignettes/filtering_data.Rmd README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/vcfR2DNAbin.Rd man/heatmap_bp.Rd man/pipe.Rd man/windowing.Rd man/vcfR_conversion.Rd man/AD_frequency.Rd man/genotype_matrix.Rd man/freq_peak.Rd man/extract_gt.Rd man/getFIX.Rd man/vcfR_test.Rd man/drplot.Rd man/maf.Rd man/addID.Rd man/is_het.Rd man/vcfR-method.Rd man/fasta_output.Rd man/INFO2df.Rd man/chromR-class.Rd man/ranking.Rd man/chromo_plot.Rd man/chromR_functions.Rd man/queryMETA.Rd man/create_chromR.Rd man/query_gt.Rd man/ordisample.Rd man/vcfR.Rd man/proc_chromR.Rd man/masplit.Rd man/chromR-method.Rd man/io_vcfR.Rd man/genetic_diff.Rd man/summary_tables.Rd man/chrom_to_vcfR.Rd man/vcfR-class.Rd man/vcfR_example.Rd man/vcfR_to_tidy_conversion.Rd
cleanup
tools
tools/pinfsc50.png
vcfR documentation built on May 30, 2017, 5:36 a.m.