vcfR_example: Example data for vcfR.

In vcfR: Manipulate and Visualize VCF Data

Example data for vcfR.

Description

An example dataset containing parts of the *Phytophthora infestans* genome.

Format

A DNAbin object, a data.frame and a vcfR object

Details

• dna DNAbin object

• gff gff format data.frame

• vcf vcfR object

This data is a subset of the pinfsc50 dataset. It has been subset to positions between 500 and 600 kbp. The coordinate systems of the vcf and gff file have been altered by subtracting 500,000. This results in a 100 kbp section of supercontig_1.50 that has positional data ranging from 1 to 100 kbp.

Note that it is encouraged to keep package contents small to facilitate easy downloading and installation. This is why a mitochondrion was chosen as an example. In practice I've used this package on supercontigs. This package was designed for much larger datasets in mind than in this example.

Examples

data(vcfR_example)

vcfR documentation built on May 29, 2024, 10:57 a.m.