visualFields: Statistical Methods for Visual Fields

A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.

AuthorIvan Marin-Franch <ivan.marin@uv.es>
Date of publication2016-01-16 12:06:24
MaintainerIvan Marin-Franch <ivan.marin@uv.es>
LicenseGPL (>= 2.0)
Version0.4.3
http://people.eng.unimelb.edu.au/aturpin/opi/index.html

View on CRAN

Man pages

agecalc: Calculates age

ageLinearModel: linear model for age effect on visual sensitivity

bebie: Bebie curve

colormapgraph: color legend for p-values in td and pd probability plots

createviewport: Wrapup for createviewport in package 'grid'

csplocmap: xy-position mapping between CSP-custom-device convention...

fdplocmap: xy-position mapping between FDP device convention and...

filterReliability: identify visual fields that did not pass filter for...

getnv: get normative values and location map

ghpostd: general height estimated as the rankRef-th ranked TD location

ghranktd: general height estimated from rank TD curve

gloperc: percentiles for global indices

hist_poplr: histogram for PoPLR analysis

lidLensArtifact: visual fields with lid or lens artifacts

loadvfcsv: load visual fields from a CSV file

loadvfxml: loads visual fields from a XML file

loadvfxmlbatch: loads visual fields from a set of XML files

locperc: percentiles for each location

nvcspsgalpha: IU normative reference values for Contrast Sensitiviy...

nvsapdefault: SUNY-IU normative reference values for static automated...

pdpmap: probability map for pattern deviation

pdpmapghr: probability map for pattern deviation from global sensitivity...

pdval: pattern deviation

pdvalghr: pattern deviation from general height rank (GHr)

poplr: permutation of Pointwise Linear Regression (PoPLR)

poplr_cstat: permutation of pointwise linear regression (PoPLR):...

poplr_pstat: Permutation of Pointwise Linear Regression (PoPLR):...

progols: progression by linear ordinary least squares

quad2Dfit: two-dimensional quadratic fitting for visual-field results

ringmapgraph: ring legend for p-values

saplocmap: xy-position mapping between HFA device convention and...

sdnv: standard deviations of normative values

sdnvghr: standard deviations of normative values of PD from...

setnv: set normative values and location map

stimLoc: stimulus location and size

tdpmap: probability map for total deviation

tdrank: total-deviation rank curve

tdrankadjperc: percentiles for adjusted TD rank curve

tdrankglm: GLM fit for TD rank curve

tdranknv: normative values for TD rank curve

tdrankperc: percentiles for TD rank curve

tdval: total deviation

vf91016csp1vf: a vf-object with CSP sample data with

vf91016left: a vf-object with SAP sample data

vf91016right: a vf-object with SAP sample data

vfcolormap: Color code for TD or PD probability maps

vfdemographics: demographics and statistics of sample in visual-fields object...

vfenv: environment with the current normative values used...

vfgrayscale: gray scales for sensitivities

vfidefault: Settings of visual field index

vfindex: visual field index

vfindexpmap: probability values for visual field index

vfiperc: percentiles for visual field index

vflayout: printout with results for the visual field

vflayoutghr: printout with results for the visual field

vflayout_legoplot: legoplot visualization for change in sensitivities over time...

vflayout_poplr: layout displaying the PoPLR analysis

vfobject: visualField objects

vfplot: visual field plot

vfplotloc: visual field data plot

vfplot_poplr: plot with the PoPLR analysis

vfsegmentcoord: calculate line segments to plot in 'vfplot' representing the...

vfselectvisit: select visits per subject from a vf-object

vfsettings: Settings of visualField object

vfShafi2011: SUNY-IU control data for static automated perimetry 10-2 SITA...

vfsort: sort vf-objects

vfstats: visual field stats

vfstatspmap: probability values for visual field global indices

visualFields-package: Statistical methods for visual fields

xmlblock: extracts a block from the XML file

xmldevval: extracts total-deviation values, pattern-deviation values,...

xmlitem: extracts from a loaded XML file the info of a tag

xmlvfval: extracts visual-field sensitivity values

xmlvfxy: dxtraction of (x,y)-coordinates of tested locations

Files in this package

visualFields
visualFields/inst
visualFields/inst/CITATION
visualFields/inst/news.txt
visualFields/NAMESPACE
visualFields/data
visualFields/data/vfidefault.rda
visualFields/data/vfShafi2011.rda
visualFields/data/nvsapdefault.rda
visualFields/data/nvcspsgalpha.rda
visualFields/data/fdplocmap.rda
visualFields/data/saplocmap.rda
visualFields/data/csplocmap.rda
visualFields/data/vf91016left.rda
visualFields/data/vfsettings.rda
visualFields/data/vfenv.rda
visualFields/data/vf91016right.rda
visualFields/data/vf91016csp1vf.rda
visualFields/R
visualFields/R/poplr_pstat.R visualFields/R/poplr.R visualFields/R/ghpostd.R visualFields/R/vfindex.R visualFields/R/vfstats.R visualFields/R/tdpmap.R visualFields/R/vfcolormap.R visualFields/R/tdval.R visualFields/R/vfplot.R visualFields/R/loadvfxmlbatch.R visualFields/R/filterReliability.R visualFields/R/ringmapgraph.R visualFields/R/xmlblock.R visualFields/R/vflayout_legoplot.R visualFields/R/tdrankperc.R visualFields/R/setnv.R visualFields/R/xmlvfxy.R visualFields/R/bebie.R visualFields/R/progols.R visualFields/R/pdval.R visualFields/R/stimLoc.R visualFields/R/loadvfxml.R visualFields/R/pdvalghr.R visualFields/R/vfplot_poplr.R visualFields/R/xmldevval.R visualFields/R/vflayoutghr.R visualFields/R/agecalc.R visualFields/R/vfgrayscale.R visualFields/R/vfindexpmap.R visualFields/R/vfstatspmap.R visualFields/R/tdrankadjperc.R visualFields/R/vfsort.R visualFields/R/sdnv.R visualFields/R/vflayout_poplr.R visualFields/R/hist_poplr.R visualFields/R/ageLinearModel.R visualFields/R/vfplotloc.R visualFields/R/createviewport.R visualFields/R/poplr_cstat.R visualFields/R/tdrank.R visualFields/R/vfsegmentcoord.R visualFields/R/ghranktd.R visualFields/R/lidLensArtifact.R visualFields/R/vfiperc.R visualFields/R/locperc.R visualFields/R/pdpmapghr.R visualFields/R/pdpmap.R visualFields/R/xmlvfval.R visualFields/R/gloperc.R visualFields/R/xmlitem.R visualFields/R/sdnvghr.R visualFields/R/vfselectvisit.R visualFields/R/tdrankglm.R visualFields/R/vflayout.R visualFields/R/getnv.R visualFields/R/tdranknv.R visualFields/R/quad2Dfit.R visualFields/R/colormapgraph.R visualFields/R/vfdemographics.R visualFields/R/loadvfcsv.R
visualFields/MD5
visualFields/DESCRIPTION
visualFields/man
visualFields/man/xmldevval.Rd visualFields/man/vfidefault.Rd visualFields/man/xmlvfxy.Rd visualFields/man/vfobject.Rd visualFields/man/tdranknv.Rd visualFields/man/vflayout_poplr.Rd visualFields/man/progols.Rd visualFields/man/lidLensArtifact.Rd visualFields/man/vfstatspmap.Rd visualFields/man/ageLinearModel.Rd visualFields/man/tdpmap.Rd visualFields/man/getnv.Rd visualFields/man/tdrankadjperc.Rd visualFields/man/createviewport.Rd visualFields/man/vfiperc.Rd visualFields/man/vfsettings.Rd visualFields/man/ghranktd.Rd visualFields/man/filterReliability.Rd visualFields/man/loadvfxml.Rd visualFields/man/ringmapgraph.Rd visualFields/man/xmlblock.Rd visualFields/man/visualFields-package.Rd visualFields/man/pdval.Rd visualFields/man/vflayout.Rd visualFields/man/quad2Dfit.Rd visualFields/man/sdnvghr.Rd visualFields/man/colormapgraph.Rd visualFields/man/csplocmap.Rd visualFields/man/vfgrayscale.Rd visualFields/man/nvsapdefault.Rd visualFields/man/vflayout_legoplot.Rd visualFields/man/tdrankperc.Rd visualFields/man/vfplot_poplr.Rd visualFields/man/ghpostd.Rd visualFields/man/pdpmapghr.Rd visualFields/man/poplr_cstat.Rd visualFields/man/poplr.Rd visualFields/man/saplocmap.Rd visualFields/man/vfsegmentcoord.Rd visualFields/man/loadvfxmlbatch.Rd visualFields/man/pdpmap.Rd visualFields/man/vf91016right.Rd visualFields/man/vfdemographics.Rd visualFields/man/vfplot.Rd visualFields/man/vfindex.Rd visualFields/man/xmlvfval.Rd visualFields/man/vfShafi2011.Rd visualFields/man/vfplotloc.Rd visualFields/man/sdnv.Rd visualFields/man/pdvalghr.Rd visualFields/man/fdplocmap.Rd visualFields/man/hist_poplr.Rd visualFields/man/gloperc.Rd visualFields/man/vfsort.Rd visualFields/man/vf91016left.Rd visualFields/man/vfselectvisit.Rd visualFields/man/vfcolormap.Rd visualFields/man/vfindexpmap.Rd visualFields/man/vflayoutghr.Rd visualFields/man/vfstats.Rd visualFields/man/bebie.Rd visualFields/man/vfenv.Rd visualFields/man/vf91016csp1vf.Rd visualFields/man/setnv.Rd visualFields/man/tdrankglm.Rd visualFields/man/nvcspsgalpha.Rd visualFields/man/xmlitem.Rd visualFields/man/locperc.Rd visualFields/man/tdrank.Rd visualFields/man/tdval.Rd visualFields/man/agecalc.Rd visualFields/man/poplr_pstat.Rd visualFields/man/loadvfcsv.Rd visualFields/man/stimLoc.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.