visualFields: Statistical Methods for Visual Fields

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A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.

Author
Ivan Marin-Franch <ivan.marin@uv.es>
Date of publication
2016-01-16 12:06:24
Maintainer
Ivan Marin-Franch <ivan.marin@uv.es>
License
GPL (>= 2.0)
Version
0.4.3
URLs

View on CRAN

Man pages

agecalc
Calculates age
ageLinearModel
linear model for age effect on visual sensitivity
bebie
Bebie curve
colormapgraph
color legend for p-values in td and pd probability plots
createviewport
Wrapup for createviewport in package 'grid'
csplocmap
xy-position mapping between CSP-custom-device convention...
fdplocmap
xy-position mapping between FDP device convention and...
filterReliability
identify visual fields that did not pass filter for...
getnv
get normative values and location map
ghpostd
general height estimated as the rankRef-th ranked TD location
ghranktd
general height estimated from rank TD curve
gloperc
percentiles for global indices
hist_poplr
histogram for PoPLR analysis
lidLensArtifact
visual fields with lid or lens artifacts
loadvfcsv
load visual fields from a CSV file
loadvfxml
loads visual fields from a XML file
loadvfxmlbatch
loads visual fields from a set of XML files
locperc
percentiles for each location
nvcspsgalpha
IU normative reference values for Contrast Sensitiviy...
nvsapdefault
SUNY-IU normative reference values for static automated...
pdpmap
probability map for pattern deviation
pdpmapghr
probability map for pattern deviation from global sensitivity...
pdval
pattern deviation
pdvalghr
pattern deviation from general height rank (GHr)
poplr
permutation of Pointwise Linear Regression (PoPLR)
poplr_cstat
permutation of pointwise linear regression (PoPLR):...
poplr_pstat
Permutation of Pointwise Linear Regression (PoPLR):...
progols
progression by linear ordinary least squares
quad2Dfit
two-dimensional quadratic fitting for visual-field results
ringmapgraph
ring legend for p-values
saplocmap
xy-position mapping between HFA device convention and...
sdnv
standard deviations of normative values
sdnvghr
standard deviations of normative values of PD from...
setnv
set normative values and location map
stimLoc
stimulus location and size
tdpmap
probability map for total deviation
tdrank
total-deviation rank curve
tdrankadjperc
percentiles for adjusted TD rank curve
tdrankglm
GLM fit for TD rank curve
tdranknv
normative values for TD rank curve
tdrankperc
percentiles for TD rank curve
tdval
total deviation
vf91016csp1vf
a vf-object with CSP sample data with
vf91016left
a vf-object with SAP sample data
vf91016right
a vf-object with SAP sample data
vfcolormap
Color code for TD or PD probability maps
vfdemographics
demographics and statistics of sample in visual-fields object...
vfenv
environment with the current normative values used...
vfgrayscale
gray scales for sensitivities
vfidefault
Settings of visual field index
vfindex
visual field index
vfindexpmap
probability values for visual field index
vfiperc
percentiles for visual field index
vflayout
printout with results for the visual field
vflayoutghr
printout with results for the visual field
vflayout_legoplot
legoplot visualization for change in sensitivities over time...
vflayout_poplr
layout displaying the PoPLR analysis
vfobject
visualField objects
vfplot
visual field plot
vfplotloc
visual field data plot
vfplot_poplr
plot with the PoPLR analysis
vfsegmentcoord
calculate line segments to plot in 'vfplot' representing the...
vfselectvisit
select visits per subject from a vf-object
vfsettings
Settings of visualField object
vfShafi2011
SUNY-IU control data for static automated perimetry 10-2 SITA...
vfsort
sort vf-objects
vfstats
visual field stats
vfstatspmap
probability values for visual field global indices
visualFields-package
Statistical methods for visual fields
xmlblock
extracts a block from the XML file
xmldevval
extracts total-deviation values, pattern-deviation values,...
xmlitem
extracts from a loaded XML file the info of a tag
xmlvfval
extracts visual-field sensitivity values
xmlvfxy
dxtraction of (x,y)-coordinates of tested locations

Files in this package

visualFields
visualFields/inst
visualFields/inst/CITATION
visualFields/inst/news.txt
visualFields/NAMESPACE
visualFields/data
visualFields/data/vfidefault.rda
visualFields/data/vfShafi2011.rda
visualFields/data/nvsapdefault.rda
visualFields/data/nvcspsgalpha.rda
visualFields/data/fdplocmap.rda
visualFields/data/saplocmap.rda
visualFields/data/csplocmap.rda
visualFields/data/vf91016left.rda
visualFields/data/vfsettings.rda
visualFields/data/vfenv.rda
visualFields/data/vf91016right.rda
visualFields/data/vf91016csp1vf.rda
visualFields/R
visualFields/R/poplr_pstat.R
visualFields/R/poplr.R
visualFields/R/ghpostd.R
visualFields/R/vfindex.R
visualFields/R/vfstats.R
visualFields/R/tdpmap.R
visualFields/R/vfcolormap.R
visualFields/R/tdval.R
visualFields/R/vfplot.R
visualFields/R/loadvfxmlbatch.R
visualFields/R/filterReliability.R
visualFields/R/ringmapgraph.R
visualFields/R/xmlblock.R
visualFields/R/vflayout_legoplot.R
visualFields/R/tdrankperc.R
visualFields/R/setnv.R
visualFields/R/xmlvfxy.R
visualFields/R/bebie.R
visualFields/R/progols.R
visualFields/R/pdval.R
visualFields/R/stimLoc.R
visualFields/R/loadvfxml.R
visualFields/R/pdvalghr.R
visualFields/R/vfplot_poplr.R
visualFields/R/xmldevval.R
visualFields/R/vflayoutghr.R
visualFields/R/agecalc.R
visualFields/R/vfgrayscale.R
visualFields/R/vfindexpmap.R
visualFields/R/vfstatspmap.R
visualFields/R/tdrankadjperc.R
visualFields/R/vfsort.R
visualFields/R/sdnv.R
visualFields/R/vflayout_poplr.R
visualFields/R/hist_poplr.R
visualFields/R/ageLinearModel.R
visualFields/R/vfplotloc.R
visualFields/R/createviewport.R
visualFields/R/poplr_cstat.R
visualFields/R/tdrank.R
visualFields/R/vfsegmentcoord.R
visualFields/R/ghranktd.R
visualFields/R/lidLensArtifact.R
visualFields/R/vfiperc.R
visualFields/R/locperc.R
visualFields/R/pdpmapghr.R
visualFields/R/pdpmap.R
visualFields/R/xmlvfval.R
visualFields/R/gloperc.R
visualFields/R/xmlitem.R
visualFields/R/sdnvghr.R
visualFields/R/vfselectvisit.R
visualFields/R/tdrankglm.R
visualFields/R/vflayout.R
visualFields/R/getnv.R
visualFields/R/tdranknv.R
visualFields/R/quad2Dfit.R
visualFields/R/colormapgraph.R
visualFields/R/vfdemographics.R
visualFields/R/loadvfcsv.R
visualFields/MD5
visualFields/DESCRIPTION
visualFields/man
visualFields/man/xmldevval.Rd
visualFields/man/vfidefault.Rd
visualFields/man/xmlvfxy.Rd
visualFields/man/vfobject.Rd
visualFields/man/tdranknv.Rd
visualFields/man/vflayout_poplr.Rd
visualFields/man/progols.Rd
visualFields/man/lidLensArtifact.Rd
visualFields/man/vfstatspmap.Rd
visualFields/man/ageLinearModel.Rd
visualFields/man/tdpmap.Rd
visualFields/man/getnv.Rd
visualFields/man/tdrankadjperc.Rd
visualFields/man/createviewport.Rd
visualFields/man/vfiperc.Rd
visualFields/man/vfsettings.Rd
visualFields/man/ghranktd.Rd
visualFields/man/filterReliability.Rd
visualFields/man/loadvfxml.Rd
visualFields/man/ringmapgraph.Rd
visualFields/man/xmlblock.Rd
visualFields/man/visualFields-package.Rd
visualFields/man/pdval.Rd
visualFields/man/vflayout.Rd
visualFields/man/quad2Dfit.Rd
visualFields/man/sdnvghr.Rd
visualFields/man/colormapgraph.Rd
visualFields/man/csplocmap.Rd
visualFields/man/vfgrayscale.Rd
visualFields/man/nvsapdefault.Rd
visualFields/man/vflayout_legoplot.Rd
visualFields/man/tdrankperc.Rd
visualFields/man/vfplot_poplr.Rd
visualFields/man/ghpostd.Rd
visualFields/man/pdpmapghr.Rd
visualFields/man/poplr_cstat.Rd
visualFields/man/poplr.Rd
visualFields/man/saplocmap.Rd
visualFields/man/vfsegmentcoord.Rd
visualFields/man/loadvfxmlbatch.Rd
visualFields/man/pdpmap.Rd
visualFields/man/vf91016right.Rd
visualFields/man/vfdemographics.Rd
visualFields/man/vfplot.Rd
visualFields/man/vfindex.Rd
visualFields/man/xmlvfval.Rd
visualFields/man/vfShafi2011.Rd
visualFields/man/vfplotloc.Rd
visualFields/man/sdnv.Rd
visualFields/man/pdvalghr.Rd
visualFields/man/fdplocmap.Rd
visualFields/man/hist_poplr.Rd
visualFields/man/gloperc.Rd
visualFields/man/vfsort.Rd
visualFields/man/vf91016left.Rd
visualFields/man/vfselectvisit.Rd
visualFields/man/vfcolormap.Rd
visualFields/man/vfindexpmap.Rd
visualFields/man/vflayoutghr.Rd
visualFields/man/vfstats.Rd
visualFields/man/bebie.Rd
visualFields/man/vfenv.Rd
visualFields/man/vf91016csp1vf.Rd
visualFields/man/setnv.Rd
visualFields/man/tdrankglm.Rd
visualFields/man/nvcspsgalpha.Rd
visualFields/man/xmlitem.Rd
visualFields/man/locperc.Rd
visualFields/man/tdrank.Rd
visualFields/man/tdval.Rd
visualFields/man/agecalc.Rd
visualFields/man/poplr_pstat.Rd
visualFields/man/loadvfcsv.Rd
visualFields/man/stimLoc.Rd