Man pages for vprr
Processing and Visualization of Video Plankton Recorder Data
| bin_calculate | Get bin averages for VPR and CTD data |
| bin_cast | Bin vpr data |
| concentration_category | Binned concentrations |
| ctd_cast | Isolate ascending or descending section of ctd cast |
| ctd_dat_combine | VPR CTD data |
| ctd_df_cols | Read CTD data (SBE49) and Fluorometer data from CTD- VPR... |
| ctd_roi_merge | VPR CTD data combined with tabulated ROIs |
| ctd_roi_oce | VPR data including CTD and ROI information |
| getRoiMeasurements | THIS FUNCTION HAS BEEN DEPRECATED |
| insertRow | INTERNAL USE ONLY quick data frame function from github to... |
| isopycnal_calculate | Get vector to draw isopycnal lines on TS plot Used internally... |
| normalize_matrix | Normalize a matrix |
| px_to_mm | Get conversion factor for pixels to mm for roi measurements |
| roi_dat_combine | VPR ROI data |
| roimeas_dat_combine | VPR measurement data calculated by Visual Plankton |
| size_df_f | VPR size information dataframe |
| taxa_conc_n | A binned data frame of concentration data per category |
| vp_plot_matrix | Plots normalized confusion matrix |
| vp_plot_unkn | Function to visualize losses to unknown category due to... |
| vpr_autoid_check | Checks manually created aid files for errors |
| vpr_autoid_copy | Copy VPR images into folders |
| vpr_autoid_create | Modifies aid and aid mea files based on manual... |
| vpr_autoid_read | Read VPR aid files |
| vpr_category | Get taxa ids from string |
| vpr_category_create | Create a new taxa to be considered for classification after... |
| vpr_ctd_files | Create a list of ctd files to be read |
| vpr_ctd_read | Read and format CTD VPR data |
| vpr_ctdroi_merge | Merge CTD and ROI data from VPR |
| vpr_ctdroisize_merge | Format CTD and Size data from VPR |
| vpr_ctd_ymd | Add Year/ month/ day hour:minute:second information |
| vpr_day | Get day identifier |
| vpr_dayhour | Find day & hour info to match each station of interest for... |
| vpr_hour | Get hour identifier |
| vpr_img_category | Explore images by depth and classification |
| vpr_img_check | Remove ROI strings from aid and aidmeas files based on a... |
| vpr_img_copy | Image copying function for specific taxa of interest |
| vpr_img_depth | Explore VPR images by depth bin |
| vpr_img_reclassified | Explore reclassified images |
| vpr_manual_classification | Function to check results of classification manually |
| vpr_oce_create | Create ctd oce object with vpr data |
| vpr_plot_contour | Interpolated contour plot of particular variable |
| vpr_plot_histsize | Plot size frequency histogram |
| vpr_plot_profile | Plots VPR profiles of temperature, salinity, density,... |
| vpr_plot_sizefreq | Size Frequency plots for VPR data |
| vpr_plot_TS | Make a balloon plot against a TS plot |
| vpr_plot_TScat | Make a balloon plot |
| vpr_pred_read | Read prediction output from a CNN model |
| vpr_roi | Get roi ids from string |
| vpr_roi_concentration | Calculate VPR concentrations |
| vpr_save | Save VPR data as an as.oce object |
| vpr_size_bin | Bin VPR size data |
| vpr_summary | Data Summary Report |
| vpr_trrois_size | Get size data from idsize files |
