scanonevar.perm: scanonevar.perm

In vqtl: Genome Scans to Accommodate and Target Genetic and Non-Genetic Effects on Trait Variance in Test Crosses

Description

scanonevar.perm conducts many permuted forms of the scanonevar inputted, to assess the statistical significance of the results in the inputted scanonevar in a FWER-controlling manner.

Usage

scanonevar.perm(sov, n.perms, random.seed = 27599,
  n.cores = parallel::detectCores() - 2, silent = TRUE)

Arguments

sov	the scanonevar whose significance should be assessed empirically in an FWER-controlling method
n.perms	the number of permutations to do
random.seed	value to start the random number generator at, for reproducibility
n.cores	number of cores to use for the permutations
silent	Should all messaging be suppressed?

Value

27599

Author(s)

Robert W. Corty [e-mail]

Examples

set.seed(27599)
test.cross <- qtl::sim.cross(map = qtl::sim.map(len = rep(20, 5), n.mar = 5), n.ind = 50)
scanonevar(cross = test.cross)

vqtl documentation built on May 2, 2019, 3:29 p.m.