scanonevar.boot: scanonevar.boot

Description Usage Arguments Value Author(s) Examples

View source: R/scanonevar.boot.R

Description

scanonevar.boot conducts a nonparametric bootstrap of one chromosome to establish a confidence interval on any peaks

Usage

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scanonevar.boot(sov, n.resamples, chr, qtl_type = c("mQTL", "vQTL",
  "mvQTL"), random.seed = 27599, n.cores = parallel::detectCores() - 2,
  silent = FALSE)

Arguments

sov

the scanonevar whose significance should be assessed empirically in an FWER-controlling method

n.resamples

the number of resamples

chr

which chromosome to focus on

qtl_type

which type of QTL did you detect and want a CI for? mQTL, vQTL, or mvQTL.

random.seed

value to start the random number generator at, for reproducibility

n.cores

number of cores to use for the permutations

silent

Should all messaging be suppressed?

Value

27599

Author(s)

Robert W. Corty [email protected]

Examples

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set.seed(27599)
test.cross <- qtl::sim.cross(map = qtl::sim.map(len = rep(20, 5), n.mar = 5), n.ind = 50)
sov <- scanonevar(cross = test.cross)

vqtl documentation built on May 2, 2019, 3:29 p.m.