Description Usage Arguments Value Author(s) Examples
View source: R/scanonevar.boot.R
scanonevar.boot
conducts a nonparametric bootstrap of one chromosome
to establish a confidence interval on any peaks
1 2 3 | scanonevar.boot(sov, n.resamples, chr, qtl_type = c("mQTL", "vQTL",
"mvQTL"), random.seed = 27599, n.cores = parallel::detectCores() - 2,
silent = FALSE)
|
sov |
the scanonevar whose significance should be assessed empirically in an FWER-controlling method |
n.resamples |
the number of resamples |
chr |
which chromosome to focus on |
qtl_type |
which type of QTL did you detect and want a CI for? mQTL, vQTL, or mvQTL. |
random.seed |
value to start the random number generator at, for reproducibility |
n.cores |
number of cores to use for the permutations |
silent |
Should all messaging be suppressed? |
27599
Robert W. Corty rcorty@gmail.com
1 2 3 | set.seed(27599)
test.cross <- qtl::sim.cross(map = qtl::sim.map(len = rep(20, 5), n.mar = 5), n.ind = 50)
sov <- scanonevar(cross = test.cross)
|
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