cs_extcompinfo: Get extended record details by ChemSpider ID

Description Usage Arguments Value Note See Also Examples

View source: R/chemspider.R

Description

Get extended info from ChemSpider, see https://www.chemspider.com/

Usage

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cs_extcompinfo(csid, token, verbose = getOption("verbose"), ...)

Arguments

csid

character, ChemSpider ID.

token

character; security token.

verbose

logical; should a verbose output be printed on the console?

...

currently not used.

Value

a data.frame with entries: 'csid', 'mf' (molecular formula), 'smiles', 'inchi' (non-standard), 'inchikey' (non-standard), 'average_mass', 'mw' (Molecular weight), 'monoiso_mass' (MonoisotopicMass), nominal_mass', 'alogp', 'xlogp', 'common_name' and 'source_url'

Note

A security token is needed. Please register at RSC https://www.rsc.org/rsc-id/register for a security token. Please respect the Terms & conditions https://www.rsc.org/help-legal/legal/terms-conditions/.

use cs_compinfo to retrieve standard inchikey.

See Also

get_csid to retrieve ChemSpider IDs, cs_compinfo for extended compound information.

Examples

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## Not run: 
token <- "<redacted>"
csid <- get_csid("Triclosan")
cs_extcompinfo(csid, token)

csids <- get_csid(c('Aspirin', 'Triclosan'))
cs_compinfo(csids)

## End(Not run)

webchem documentation built on Dec. 11, 2021, 9:54 a.m.