wgaim: Whole Genome Average Interval Mapping for QTL Detection using Mixed Models
Version 1.4-11

Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.

AuthorJulian Taylor <julian.taylor@adelaide.edu.au>, Simon Diffey <simon.diffey@dpi.nsw.gov.au>, Ari Verbyla <ari.verbyla@csiro.au> and Brian Cullis <bcullis@uow.edu.au>.
Date of publication2016-06-30 12:14:16
MaintainerJulian Taylor <julian.taylor@adelaide.edu.au>
LicenseGPL (>= 2)
Version1.4-11
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("wgaim")

Getting started

Package overview

Popular man pages

genoCxR: Genotypic marker data for Cascades x RAC875-2 doubled haploid...
link.map.cross: Plot a genetic linkage map
link.map.default: Plot a genetic linkage map with QTL for multiple traits
link.map.wgaim: Plot a genetic linkage map with QTL's
phenoCxR: Phenotypic Cascades x RAC875-2 zinc experiment data frame
phenoRxK: Phenotypic RAC875 x Kukri trial data frame
wgaim-internal: Internal wgaim functions
See all...

All man pages Function index File listing

Man pages

cross2int: Convert a cross genetic object to an interval object
genoCxR: Genotypic marker data for Cascades x RAC875-2 doubled haploid...
genoRxK: Genotypic marker data for RAC875 x Kukri doubled haploid...
genoSxT: Genotypic marker data for Sunco x Tasman doubled haploid...
link.map.cross: Plot a genetic linkage map
link.map.default: Plot a genetic linkage map with QTL for multiple traits
link.map.wgaim: Plot a genetic linkage map with QTL's
out.stat: Plot the blups or interval outlier statistics from specififed...
phenoCxR: Phenotypic Cascades x RAC875-2 zinc experiment data frame
phenoRxK: Phenotypic RAC875 x Kukri trial data frame
phenoSxT: Phenotypic Sunco x Tasman trial data frame
qtlTable: Stack QTL summary information into a super table
summary.wgaim: Summary and print methods for the class "wgaim"
tr.wgaim: Display diagnostic information about wgaim QTL model
wgaim.asreml: wgaim method for class "asreml"
wgaim-internal: Internal wgaim functions
wgaim-package: Whole Genome Average Interval Mapping (wgaim) for QTL...

Functions

addiag Man page Source code
cross2int Man page Source code
envDestruct Man page Source code
error.code Man page Source code
fix.map Man page Source code
genoCxR Man page
genoRxK Man page
genoSxT Man page
getQTL Man page Source code
link.map Man page Source code
link.map.cross Man page Source code
link.map.default Man page Source code
link.map.wgaim Man page Source code
mergeData Man page Source code
miss.q Man page Source code
onAttach Source code
out.stat Man page Source code
phenoCxR Man page
phenoRxK Man page
phenoSxT Man page
print.summary.wgaim Man page
print.wgaim Man page Source code
qtl.pick Man page Source code
qtlTable Man page Source code
summary.wgaim Man page Source code
tr Man page Source code
tr.wgaim Man page Source code
updateWgaim Man page Source code
v.init Man page Source code
v.modify Man page Source code
wgaim Man page Source code
wgaim-package Man page
wgaim.asreml Man page Source code
wgaim.default Man page Source code

Files

inst
inst/CITATION
inst/NEWS.Rd
inst/extdata
inst/extdata/phenoCxR.csv
inst/extdata/genoRxK.csv
inst/extdata/genoSxT.csv
inst/extdata/phenoRxK.csv
inst/extdata/phenoSxT.csv
inst/extdata/genoCxR.csv
inst/doc
inst/doc/CxRExample.R
inst/doc/RxKExample.R
inst/doc/SxTExample.R
inst/doc/wgaim.pdf
NAMESPACE
data
data/phenoRxK.RData
data/genoSxT.RData
data/phenoSxT.RData
data/phenoCxR.RData
data/genoCxR.RData
data/genoRxK.RData
R
R/wgaim11.R
R/zzz.R
MD5
DESCRIPTION
man
man/link.map.default.Rd
man/link.map.wgaim.Rd
man/genoRxK.Rd
man/wgaim-package.Rd
man/cross2int.Rd
man/tr.wgaim.Rd
man/phenoSxT.Rd
man/genoSxT.Rd
man/phenoRxK.Rd
man/qtlTable.Rd
man/wgaim.asreml.Rd
man/out.stat.Rd
man/phenoCxR.Rd
man/summary.wgaim.Rd
man/genoCxR.Rd
man/link.map.cross.Rd
man/wgaim-internal.Rd
wgaim documentation built on May 19, 2017, 4:33 p.m.

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