wgaim: Whole Genome Average Interval Mapping for QTL Detection using Mixed Models

Share:

Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.

Author
Julian Taylor <julian.taylor@adelaide.edu.au>, Simon Diffey <simon.diffey@dpi.nsw.gov.au>, Ari Verbyla <ari.verbyla@csiro.au> and Brian Cullis <bcullis@uow.edu.au>.
Date of publication
2016-06-30 12:14:16
Maintainer
Julian Taylor <julian.taylor@adelaide.edu.au>
License
GPL (>= 2)
Version
1.4-11

View on CRAN

Man pages

cross2int
Convert a cross genetic object to an interval object
genoCxR
Genotypic marker data for Cascades x RAC875-2 doubled haploid...
genoRxK
Genotypic marker data for RAC875 x Kukri doubled haploid...
genoSxT
Genotypic marker data for Sunco x Tasman doubled haploid...
link.map.cross
Plot a genetic linkage map
link.map.default
Plot a genetic linkage map with QTL for multiple traits
link.map.wgaim
Plot a genetic linkage map with QTL's
out.stat
Plot the blups or interval outlier statistics from specififed...
phenoCxR
Phenotypic Cascades x RAC875-2 zinc experiment data frame
phenoRxK
Phenotypic RAC875 x Kukri trial data frame
phenoSxT
Phenotypic Sunco x Tasman trial data frame
qtlTable
Stack QTL summary information into a super table
summary.wgaim
Summary and print methods for the class "wgaim"
tr.wgaim
Display diagnostic information about wgaim QTL model
wgaim.asreml
wgaim method for class "asreml"
wgaim-internal
Internal wgaim functions
wgaim-package
Whole Genome Average Interval Mapping (wgaim) for QTL...

Files in this package

wgaim
wgaim/inst
wgaim/inst/CITATION
wgaim/inst/NEWS.Rd
wgaim/inst/extdata
wgaim/inst/extdata/phenoCxR.csv
wgaim/inst/extdata/genoRxK.csv
wgaim/inst/extdata/genoSxT.csv
wgaim/inst/extdata/phenoRxK.csv
wgaim/inst/extdata/phenoSxT.csv
wgaim/inst/extdata/genoCxR.csv
wgaim/inst/doc
wgaim/inst/doc/CxRExample.R
wgaim/inst/doc/RxKExample.R
wgaim/inst/doc/SxTExample.R
wgaim/inst/doc/wgaim.pdf
wgaim/NAMESPACE
wgaim/data
wgaim/data/phenoRxK.RData
wgaim/data/genoSxT.RData
wgaim/data/phenoSxT.RData
wgaim/data/phenoCxR.RData
wgaim/data/genoCxR.RData
wgaim/data/genoRxK.RData
wgaim/R
wgaim/R/wgaim11.R
wgaim/R/zzz.R
wgaim/MD5
wgaim/DESCRIPTION
wgaim/man
wgaim/man/link.map.default.Rd
wgaim/man/link.map.wgaim.Rd
wgaim/man/genoRxK.Rd
wgaim/man/wgaim-package.Rd
wgaim/man/cross2int.Rd
wgaim/man/tr.wgaim.Rd
wgaim/man/phenoSxT.Rd
wgaim/man/genoSxT.Rd
wgaim/man/phenoRxK.Rd
wgaim/man/qtlTable.Rd
wgaim/man/wgaim.asreml.Rd
wgaim/man/out.stat.Rd
wgaim/man/phenoCxR.Rd
wgaim/man/summary.wgaim.Rd
wgaim/man/genoCxR.Rd
wgaim/man/link.map.cross.Rd
wgaim/man/wgaim-internal.Rd