geno_freq_calc_single: from on 012 file compute expected (assuming HW equilbrium)...
In whoa: Evaluation of Genotyping Error in Genotype-by-Sequencing Data

Description Usage Arguments Value Examples

This is an internal function.

1	geno_freq_calc_single(g012)

g012

an 012 matrix, with indivs in rows and loci in columns. Missing data can be -1 or NA. The matrix must have colnames which are the locus names.

See information for return value of exp_and_obs_geno_freqs.

# get an 012 matrix from the lobster data
tmp <- t(vcfR::extract.gt(lobster_buz_2000, element = "GT"))
locnames <- colnames(tmp)
g <- make_it_012(tmp)
colnames(g) <- locnames # put these back on since make_it_012 removes them
gf <- geno_freq_calc_single(g)