whoa: whoa: Evaluation of genotyping error in genotype by...

Description the whoa main high-level functions example data


The name is found in the capitals here: Where's my Heterozygotes?! Observations of genotyping Accuracy.

the whoa main high-level functions

The main function in the package whoa is infer_m. This function infers the heterozygote miscall rate (the rate at which true heterozygotes have been miscalled as homozygotes in genotype-by-sequencing data) for calls made upon genotypes falling within different read depth categories.

The output from infer_m is easily plotted by passing the m_posteriors component of the output list from infer_m into posteriors_plot.

example data

The package comes with a small data set, lobster_buz_2000, which was read in from a variant call format (VCF) file and is now stored in the package as a ‘vcfR’ object.

whoa documentation built on Aug. 11, 2021, 9:06 a.m.