whoa: whoa: Evaluation of genotyping error in genotype by...
In whoa: Evaluation of Genotyping Error in Genotype-by-Sequencing Data
Description
the whoa main high-level functions
example data
Description
The name is found in the capitals here: Where's my Heterozygotes?! Observations
of genotyping Accuracy.
the whoa main high-level functions
The main function in the package whoa is infer_m.
This function infers the heterozygote miscall rate (the rate at
which true heterozygotes have been miscalled as homozygotes in
genotype-by-sequencing data) for calls made upon genotypes falling
within different read depth categories.
The output from infer_m is easily plotted by passing the
m_posteriors component of the output list from infer_m into
posteriors_plot.
example data
The package comes with a small data set, lobster_buz_2000, which
was read in from a variant call format (VCF) file and is now stored in the package as a ‘vcfR’ object.
whoa documentation built on Aug. 11, 2021, 9:06 a.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description the whoa main high-level functions example data
Description
The name is found in the capitals here: Where's my Heterozygotes?! Observations
of genotyping Accuracy.
the whoa main high-level functions
The main function in the package whoa is infer_m.
This function infers the heterozygote miscall rate (the rate at
which true heterozygotes have been miscalled as homozygotes in
genotype-by-sequencing data) for calls made upon genotypes falling
within different read depth categories.
The output from infer_m is easily plotted by passing the
m_posteriors component of the output list from infer_m into
posteriors_plot.
example data
The package comes with a small data set, lobster_buz_2000, which
was read in from a variant call format (VCF) file and is now stored in the package as a ‘vcfR’ object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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