checkFilePath: Verify File-name If Existing (in specified path), If Has...

In wrMisc: Analyze Experimental High-Throughput (Omics) Data

Verify File-name If Existing (in specified path), If Has Proper Extension Or Select Files With Proper Extension From Given Path

Description

This function allows tesing if a given file-name corresponds to an existing file (eg for reading lateron). Indications to the path and file-extensions may be given separately. If no files do match .gz compressed versions may be searched, too.

Usage

checkFilePath(
  fileName = NULL,
  path = "./",
  expectExt = "",
  mode = "compressedOption",
  compressedOption = NULL,
  strictExtension = NULL,
  stopIfNothing = NULL,
  silent = FALSE,
  debug = FALSE,
  callFrom = NULL
)

Arguments

fileName	(character) name of file to be tested; may also include an absolute or relative path; if NULL and path as well as expectExt will take 1st file in given path and proper extension
path	(character, length=1) optional separate entry for path of fileName
expectExt	(character) file extension (will not be considered if "")
mode	(character) further details if function should give error or warning if no files found integrates previous argument compressedOption to also look for look for .gz compressed files; strictExtension to decide if extension (expectExt) - if given - should be considered obligatory; stopIfNothing to stop with error if no files found
compressedOption	deprected (logical) also look for .gz compressed files
strictExtension	deprected (logical) decide if extesion (expectExt) - if given - should be considered obligatory
stopIfNothing	deprected, please use argument mode instead !
silent	(logical) suppress messages
debug	(logical) additional messages for debugging
callFrom	(character) allow easier tracking of messages produced

Details

When the filename given by the user exists but it's file-extension is not matching expectExt the argument strictExtension allows to decide if the filename will still be returned or not.

When expectExt is given, initial search will look for perfect matches. However, if nothing is found and strictExtension=FALSE, a more relaxed and non-case-sensitive search will be performed.

Value

This function returns a character vector with verified file-name(s) (and path), returns NULL if nothing found - unless mode="stopIfNothing"

See Also

file.exists

Examples

(RhomeFi <- list.files(R.home()))
file.exists(file.path(R.home(), "bin"))
checkFilePath(c("xxx","unins000"), R.home(), expectExt="dat")

wrMisc documentation built on April 3, 2025, 8:17 p.m.