combineReplFromListToMatr: Combine replicates from list to matrix

In wrMisc: Analyze Experimental High-Throughput (Omics) Data

Combine replicates from list to matrix

Description

Suppose multiple measures (like multiple chanels) are taken for subjects and these measures are organized as groups in a list, like muliple parameters (= channels) or types of measurements (typically many paramters are recorded when screeinig compounds in microtiter plates). Within one parameter/channel all replicate-data from separate list-entries ('lst') will get combined according to names of list-elements. The function will trim any redundant text in names of list-elements, try to isolate separator (may vary among replicate-groups, but should be 1 character long). eg names "hct116 1.1.xlsx" & "hct116 1.2.xlsx" will be combined as replicates, "hct116 2.1.xlsx" will be considered as new group.

Usage

combineReplFromListToMatr(lst, silent = FALSE, debug = FALSE, callFrom = NULL)

Arguments

lst	(list) list of arrays (typically multi-parameter measures of micortiterplate data)
silent	(logical) suppress messages
debug	(logical) additional messages for debugging
callFrom	(character) allow easier tracking of messages produced

Value

list of arrays now with same dimension of arrays (but shorter, since replicate-arrays were combined)

See Also

extr1chan, organizeAsListOfRepl

Examples

lst2 <- list(aa_1x=matrix(1:12,nrow=4,byrow=TRUE),ab_2x=matrix(24:13,nrow=4,byrow=TRUE))
combineReplFromListToMatr(lst2)

wrMisc documentation built on Sept. 11, 2024, 6:10 p.m.