xpose4: Tools for Nonlinear Mixed-Effect Model Building and Diagnostics

Xpose is collection of functions to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison.

AuthorAndrew C. Hooker [aut, cre, cph], Mats O. Karlsson [aut, cph], Justin J. Wilkins [aut], E. Niclas Jonsson [aut, trl, cph], Ron Keizer [ctb] (functionality for bootstrap of GAM and SCM)
Date of publication2014-11-24 12:05:52
MaintainerAndrew C. Hooker <andrew.hooker@farmbio.uu.se>
LicenseLGPL (>= 3)
Version4.5.3
http://xpose.sourceforge.net

View on CRAN

Man pages

absval.cwres.vs.cov.bw: Absolute conditional weighted residuals vs covariates for...

absval.cwres.vs.pred: Absolute population conditional weighted residuals vs...

absval.cwres.vs.pred.by.cov: Absolute value of the conditional weighted residuals vs....

absval.delta.vs.cov.model.comp: Model comparison plots, of absolute differences in...

absval.iwres.vs.ipred: Absolute individual weighted residuals vs individual...

absval.iwres.vs.ipred.by.cov: Absolute individual weighted residuals vs individual...

absval.iwres.vs.pred: Absolute individual weighted residuals vs population...

absval.iwres.wres.vs.ipred.pred: Absolute population weighted residuals vs population...

absval.wres.vs.cov.bw: Absolute weighted residuals vs covariates for Xpose 4

absval.wres.vs.idv: Absolute value of (C)WRES vs. independent variable plot in...

absval.wres.vs.pred: Absolute population weighted residuals vs population...

absval.wres.vs.pred.by.cov: Absolute population weighted residuals vs population...

add.functions: Column-transformation functions for Xpose 4

add.grid.table: Print tables or text in a grid object

addit.gof: Additional goodness-of-fit plots, for Xpose 4

add.model.comp: Additional model comparison plots, for Xpose 4

autocorr.cwres: Autocorrelation of conditional weighted residuals for Xpose 4

autocorr.wres: Autocorrelation of weighted residuals for Xpose 4

basic.gof: Basic goodness-of-fit plots, for Xpose 4

basic.model.comp: Basic model comparison plots, for Xpose 4

bootgam.print: Print summary information for a bootgam or bootscm

boot.hist: Function to create histograms of results from the 'bootstrap'...

bootscm.import: Import bootscm data into R/Xpose

cat.dv.vs.idv.sb: Categorical observations vs. idependent variable using...

cat.pc: Categorical (visual) predictive check.

change.graphical.parameters: Functions changing variable definitions in Xpose 4

change.misc.parameters: Functions changing miscellaneous parameter settings in Xpose...

change.parm: Change parameter scope.

change.var.name: Changes the name of an Xpose data item

change.xlabel: Changes the label of an Xpose data item

change.xvardef: Change Xpose variable definitions.

compute.cwres: Compute the Conditional Weighted Residuals

create.mirror: Function to create mirror plots from the generic Xpose...

createXposeClasses: This function creates the Xpose data classes ("xpose.data"...

create.xpose.plot.classes: Create xpose.multiple.plot class.

cwres.dist.hist: Histogram of conditional weighted residuals (CWRES), for...

cwres.dist.qq: Quantile-quantile plot of conditional weighted residuals...

cwres.vs.cov: Conditional Weighted residuals (CWRES) plotted against...

cwres.vs.idv: Population conditional weighted residuals (CWRES) plotted...

cwres.vs.idv.bw: Box-and-whisker plot of conditional weighted residuals vs the...

cwres.vs.pred: Population conditional weighted residuals (CWRES) plotted...

cwres.vs.pred.bw: Box-and-whisker plot of conditional weighted residuals vs...

cwres.wres.vs.idv: Weighted residuals (WRES) and conditional WRES (CWRES)...

Data: Extract data from an xpose.data object.

data.checkout: Check through the source dataset to detect problems

db.names: Prints the contents of an Xpose data object

dist.hist: Plot the parameter or covariate distributions using a...

dist.qq: Plot the parameter or covariate distributions using...

dOFV1.vs.dOFV2: Change in individual objective function value 1 vs....

dOFV.vs.cov: Change in individual objective function value vs. covariate...

dOFV.vs.id: Change in Objective function value vs. removal of...

dv.vs.idv: Observations (DV) plotted against the independent variable...

dv.vs.ipred: Observations (DV) plotted against individual predictions...

dv.vs.ipred.by.cov: Dependent variable vs individual predictions, conditioned on...

dv.vs.ipred.by.idv: Dependent variable vs individual predictions, conditioned on...

dv.vs.pred: Observations (DV) plotted against population predictions...

dv.vs.pred.by.cov: Dependent variable vs population predictions, conditioned on...

dv.vs.pred.by.idv: Dependent variable vs population predictions, conditioned on...

dv.vs.pred.ipred: Observations (DV) are plotted against individual predictions...

export.graph.par: Exports Xpose graphics settings to a file.

export.variable.definitions: Exports Xpose variable definitions to a file from an Xpose...

functions-classic: Classic menu functions for Xpose 4

functions-data: Data functions for Xpose 4

functions-generic: Generic internal functions for Xpose 4

gof: Structured goodness of fit diagnostics.

import.graph.par: Imports Xpose graphics settings from a file to an Xpose data...

import.variable.definitions: Imports Xpose variable definitions from a file to an Xpose...

ind.plots: Observations (DV), individual predictions (IPRED) and...

ind.plots.wres.hist: Histograms of weighted residuals for each individual in an...

ind.plots.wres.qq: Quantile-quantile plots of weighted residuals for each...

internal.functions: Internal functions for the VPC

ipred.vs.idv: Individual predictions (IPRED) plotted against the...

iwres.dist.hist: Histogram of individual weighted residuals (IWRES), for Xpose...

iwres.dist.qq: Quantile-quantile plot of individual weighted residuals...

iwres.vs.idv: Individual weighted residuals (IWRES) plotted against the...

kaplan.plot: Kaplan-Meier plots of (repeated) time-to-event data

make.sb.data: Make stacked bar data set.

npc.coverage: Function to plot the coverage of the Numerical Predictive...

nsim: Extract or set the value of the Nsim slot.

parm.vs.cov: Parameters plotted against covariates, for Xpose 4

parm.vs.parm: Plot parameters vs other parameters

pred.vs.idv: Population predictions (PRED) plotted against the independent...

print.xpose.multiple.plot: Print an Xpose multiple plot object.

randtest.hist: Function to create a histogram of results from the...

ranpar.vs.cov: Random parameters plotted against covariates, for Xpose 4

read.nm.output: Read NONMEM output files into Xpose 4

read.nm.tables: Reading NONMEM table files

read.npc.vpc.results: Read the results file from a Numerical or Visual Predictive...

read.TTE.sim.data: Read (repeated) time-to-event simulation data files.

read.vpctab: Read the vpctab file from PsN into Xpose

reset: Resets Xpose variable definitions to factory settings

runsum: Print run summary in Xpose 4

simprazExample: Function to create files for the simulated Prazosin example...

simpraz.xpdb: Simulated prazosin Xpose database.

splom: Plot scatterplot matrices of parameters, random parameters or...

summary: Summarize individual parameter values and covariates

tables: Generic table functions for Xpose 4

tabulate.parameters: Tabulate the population parameter estimates

wres.dist.hist: Histogram of weighted residuals (WRES), for Xpose 4

wres.dist.qq: Quantile-quantile plot of weighted residuals (WRES), for...

wres.vs.cov: Weighted residuals (WRES) plotted against covariates, for...

wres.vs.idv: Population weighted residuals (WRES) plotted against the...

wres.vs.idv.bw: Box-and-whisker plot of weighted residuals vs the independent...

wres.vs.pred: Population weighted residuals (WRES) plotted against...

wres.vs.pred.bw: Box-and-whisker plot of weighted residuals vs population...

xlabel: Extract and set labels for Xpose data items.

xp.boot.par.est: Compare parameter estimates for covariate coefficients

xp.boot.par.est.corr: Correlations between covariate coefficients

xp.distr.mod.size: Plot of model size distribution for a bootgam or bootscm

xp.dofv.plot: OFV difference (optimism) plot.

xp.gam: GAM functions for Xpose 4

xp.incl.index.cov: Plot of inclusion index of covariates.

xp.incl.index.cov.comp: Inclusion index individuals, compare between covariates.

xp.incl.index.cov.ind: Individual inclusion index

xp.inc.prob: Inclusion frequency plot

xp.inc.prob.comb.2: Inclusion frequency plot for combination of covariates.

xp.inc.stab.cov: Inclusion stability plot

xpose4classic-internal: Internal xpose4classic Functions

xpose4classic-package: Xpose classic menu system

xpose4data-internal: Internal xpose4data Functions

xpose4data-package: Xpose database creation and manipulation

xpose4generic-package: Xpose generic multi-purpose functions

xpose4-package: The Xpose Package

xpose4psn-package: Xpose PsN post-processing functions

xpose4specific-internal: Internal xpose4specific Functions

xpose4specific-package: Xpose specific functions for a single purpose

xpose.ask.for.filename: Function to ask the user for the name of a file

xpose.create.title: Functions to create labels for plots

xpose.create.title.text: Create Xpose title text for plots.

xpose.data: Creates an Xpose data object

xpose.data-class: Class xpose.data

xpose.dev.new: Create a new graphical device for an Xpose plot.

xpose.gam: Stepwise GAM search for covariates on a parameter (Xpose 4)

xpose.license.citation: Displays the Xpose license and citation information

xpose.multiple.plot: Create and object with class "xpose.multiple.plot".

xpose.multiple.plot.default: Xpose 4 generic function for plotting multiple lattice...

xpose.panel.bw: Default box-and-whisker panel function for Xpose 4

xpose.panel.default: Default panel function for Xpose 4

xpose.panel.histogram: Default histogram panel function for Xpose 4

xpose.panel.qq: Default QQ panel function for Xpose 4

xpose.panel.splom: Scatterplot matrix panel function for Xpose 4

xpose.plot.bw: The generic Xpose functions for box-and-whisker plots

xpose.plot.default: The Xpose 4 generic functions for continuous y-variables.

xpose.plot.histogram: The Xpose 4 generic functions for continuous y-variables.

xpose.plot.qq: The generic Xpose functions for QQ plots

xpose.plot.splom: The Xpose 4 generic functions for scatterplot matrices.

xpose.prefs-class: Class "xpose.prefs"

xpose.string.print: Print a pretty string.

xpose.VPC: Visual Predictive Check (VPC) using XPOSE

xpose.VPC.both: Xpose Visual Predictive Check (VPC) for both continuous and...

xpose.VPC.categorical: Xpose visual predictive check for categorical data.

xpose.yscale.components.log10: Functions to create nice looking axes when using Log scales.

xsubset: Extract or set the value of the Subset slot.

xvardef: Extracts and set Xpose variable definitions.

Functions

absval.cwres.vs.cov.bw Man page
absval.cwres.vs.pred Man page
absval.cwres.vs.pred.by.cov Man page
absval.dcwres.vs.cov.model.comp Man page
absval.dipred.vs.cov.model.comp Man page
absval.diwres.vs.cov.model.comp Man page
absval.dpred.vs.cov.model.comp Man page
absval.dwres.vs.cov.model.comp Man page
absval.iwres.cwres.vs.ipred.pred Man page
absval.iwres.vs.cov.bw Man page
absval.iwres.vs.idv Man page
absval.iwres.vs.ipred Man page
absval.iwres.vs.ipred.by.cov Man page
absval.iwres.vs.pred Man page
absval.iwres.wres.vs.ipred.pred Man page
absval.wres.vs.cov.bw Man page
absval.wres.vs.idv Man page
absval.wres.vs.pred Man page
absval.wres.vs.pred.by.cov Man page
add.absval Man page
add.dichot Man page
add.exp Man page
add.grid.table Man page
add.grid.text Man page
addid Man page
addit.gof Man page
add.log Man page
add.model.comp Man page
add.modify.db.items.menu Man page
add.tad Man page
another.menu Man page
ask.bootgam.bootscm.type Man page
ask.cov.name Man page
ask.covs.plot Man page
ask.folder Man page
ask.group.by.cov Man page
ask.incl.range Man page
as.num Man page
autocorr.cwres Man page
autocorr.iwres Man page
autocorr.wres Man page
basic.gof Man page
basic.model.comp Man page
bg.conv.crit1 Man page
bg.conv.crit2 Man page
bootgam.conv.crit1 Man page
bootgam.conv.crit2 Man page
bootgam.menu Man page
bootgam.plot.menu Man page
bootgam.print Man page
bootgam.settings.menu Man page
boot.hist Man page
bootscm.import Man page
bootscm.menu Man page
bootscm.plot.menu Man page
calc.npar Man page
cat.dv.vs.idv.sb Man page
categorical.table Man page
cat.pc Man page
change.ab.graph.par Man page
change.bw.graph.par Man page
change.cat.cont Man page
change.cat.cont<- Man page
change.cat.levels Man page
change.cat.levels<- Man page
change.cond.graph.par Man page
change.conv.alg Man page
change.dil.graph.par Man page
change.dispersion Man page
change.dv.cat.levels Man page
change.dv.cat.levels<- Man page
change.graphical.par Man page
change.label.par Man page
change.lm.graph.par Man page
change.medianNorm Man page
change.misc.graph.par Man page
change.miss Man page
change.onlyfirst Man page
change.parm Man page
change.pi.graph.par Man page
change.smooth.graph.par Man page
change.steppit Man page
change.subset Man page
change.use.ids Man page
change.var.name Man page
change.xlabel Man page
change.xp.obj Man page
change.xvardef Man page
change.xvardef<- Man page
check.bootgamobj Man page
check.gamobj Man page
check.vars Man page
compute.cwres Man page
computePI Man page
continuous.table Man page
convert.bootscm.bs.ids Man page
convert.bootscm.cov.inclusion Man page
convert.cov.name Man page
convert.most.common Man page
covariate.model.menu Man page
cov.hist Man page
cov.qq Man page
cov.splom Man page
cov.summary Man page
create.mirror Man page
create.parameter.list Man page
create.rand Man page
create.strat.rand Man page
createXposeClasses Man page
create.xpose.plot.classes Man page
cwres.dist.hist Man page
cwres.dist.qq Man page
cwres.menu Man page
cwres.vs.cov Man page
cwres.vs.idv Man page
cwres.vs.idv.bw Man page
cwres.vs.pred Man page
cwres.vs.pred.bw Man page
cwres.wres.vs.idv Man page
cwres.wres.vs.pred Man page
Data Man page
Data<- Man page
data.checkout Man page
data.checkout.menu Man page
data.long Man page
db.names Man page
documentation.menu Man page
dOFV1.vs.dOFV2 Man page
dOFV.vs.cov Man page
dOFV.vs.id Man page
dv.vs.idv Man page
dv.vs.ipred Man page
dv.vs.ipred.by.cov Man page
dv.vs.ipred.by.idv Man page
dv.vs.pred Man page
dv.vs.pred.by.cov Man page
dv.vs.pred.by.idv Man page
dv.vs.pred.ipred Man page
eq.xpose Man page
exclude.individuals Man page
export.graph.par Man page
export.variable.definitions Man page
find.right.table Man page
fix.wrapped.lines Man page
gam.change.weights Man page
gam.menu Man page
gam.settings.menu Man page
get.boot.obj Man page
get.boot.type Man page
get.cov.stats Man page
get.doc Man page
get.pars.from.relations.file Man page
get.polygon.regions Man page
get.refrunno Man page
gof Man page
gof.menu Man page
gofSetup Man page
import.graph.par Man page
import.variable.definitions Man page
ind.cwres Man page
ind.plots Man page
ind.plots.cwres.hist Man page
ind.plots.cwres.qq Man page
ind.plots.wres.hist Man page
ind.plots.wres.qq Man page
ipred.vs.idv Man page
is.cwres.readable.file Man page
is.readable.file Man page
iwres.dist.hist Man page
iwres.dist.qq Man page
iwres.vs.idv Man page
kaplan.plot Man page
list.bootgam.settings Man page
list.dirs Man page
list.gam.settings Man page
main.menu Man page
make.sb.data Man page
manage.db Man page
model.comparison.covariates.menu Man page
model.comparison.menu Man page
normalize.median Man page
npc.coverage Man page
nsim Man page
nsim<- Man page
panel.ci Man page
parameters.menu Man page
parm.hist Man page
parm.qq Man page
parm.splom Man page
parm.summary Man page
parm.vs.cov Man page
parm.vs.parm Man page
pred.vs.idv Man page
preferences.menu Man page
prepanel.ci Man page
print.xpose.multiple.plot Man page
print,xpose.multiple.plot-method Man page
randtest.hist Man page
ranpar.hist Man page
ranpar.qq Man page
ranpar.splom Man page
ranpar.vs.cov Man page
read.bootscm.par.est Man page
read.cwres.data Man page
read.lst Man page
read.lst6 Man page
read.lst7 Man page
read.nm.tables Man page
read.npc.vpc.results Man page
read.phi Man page
read.scm.covariate.sd Man page
read.TTE.sim.data Man page
read.vpctab Man page
reset.graph.par Man page
reset.variables Man page
reshape.simple Man page
residual.diagnostics.menu Man page
runsum Man page
runsum.print Man page
SData Man page
SData<- Man page
set.doc Man page
set.max.replicates Man page
set.seed.number Man page
setup.PPI Man page
simprazExample Man page
simpraz.xpdb Man page
specify.interval Man page
specify.start.check Man page
specify.start.model Man page
sqrtm Man page
struct.gof.menu Man page
structural.diagnostics.menu Man page
table.file.read.settings.menu Man page
tabulate.parameters Man page
test.covariate.levels Man page
test.xpose.data Man page
vpc.npc.menu Man page
wres.dist.hist Man page
wres.dist.qq Man page
wres.vs.cov Man page
wres.vs.idv Man page
wres.vs.idv.bw Man page
wres.vs.pred Man page
wres.vs.pred.bw Man page
xlabel Man page
xlabel<- Man page
xp.akaike.plot Man page
xp.bootgam Man page
xp.boot.par.est Man page
xp.boot.par.est.corr Man page
xp.check.scope Man page
xp.cook Man page
xp.distr.mod.size Man page
xp.dofv.plot Man page
xp.gam Man page
xp.get.disp Man page
xp.incl.index.cov Man page
xp.incl.index.cov.comp Man page
xp.incl.index.cov.ind Man page
xp.inc.prob Man page
xp.inc.prob.comb.2 Man page
xp.inc.stab.cov Man page
xp.ind.inf.fit Man page
xp.ind.inf.terms Man page
xp.ind.stud.res Man page
xpose Man page
xpose4 Man page
xpose4 Man page
xpose4classic-package Man page
xpose4data-package Man page
xpose4generic-package Man page
xpose4-package Man page
xpose4psn-package Man page
xpose4specific-package Man page
xpose.ask.for.filename Man page
xpose.ask.for.lst Man page
xpose.ask.for.mod Man page
xpose.bin Man page
xpose.bin Man page
xpose.bootgam Man page
xpose.bootgam.drawsample Man page
xpose.bootgam.extract.covnames Man page
xpose.calculate.cwres Man page
xpose.create.label Man page
xpose.create.title Man page
xpose.create.title.hist Man page
xpose.create.title.text Man page
xpose.data Man page
xpose.data-class Man page
xpose.dev.new Man page
xpose.gam Man page
xpose.license.citation Man page
xpose.logTicks Man page
xpose.multiple.plot Man page
xpose.multiple.plot.default Man page
xpose.multiple.plot.title Man page
xpose.panel.bw Man page
xpose.panel.default Man page
xpose.panel.histogram Man page
xpose.panel.qq Man page
xpose.panel.splom Man page
xpose.plot.bw Man page
xpose.plot.default Man page
xpose.plot.histogram Man page
xpose.plot.qq Man page
xpose.plot.splom Man page
xpose.prefs-class Man page
xpose.print Man page
xpose.read Man page
xpose.stack Man page
xpose.string.print Man page
xpose.VPC Man page
xpose.VPC.both Man page
xpose.VPC.categorical Man page
xpose.write Man page
xpose.xscale.components.log10 Man page
xpose.yscale.components.log10 Man page
xpPage Man page
xp.plot Man page
xp.scope3 Man page
xp.summary Man page
xsubset Man page
xsubset<- Man page
xvardef Man page
xvardef<- Man page

Files

xpose4
xpose4/inst
xpose4/inst/CITATION
xpose4/inst/xpose.ini
xpose4/NAMESPACE
xpose4/NEWS
xpose4/data
xpose4/data/simpraz.xpdb.RData
xpose4/R
xpose4/R/get.doc.R xpose4/R/wres.vs.pred.bw.R xpose4/R/xpose.log.axes.R xpose4/R/xp.summary.R xpose4/R/xpose.VPC.both.R xpose4/R/data.checkout.menu.R xpose4/R/change.xp.obj.R xpose4/R/change.smooth.graph.par.R xpose4/R/addid.R xpose4/R/wres.vs.idv.bw.R xpose4/R/ranpar.vs.cov.R xpose4/R/xpose.read.R xpose4/R/Data.R xpose4/R/test.xpose.data.R xpose4/R/manage.db.R xpose4/R/compute.cwres.R xpose4/R/model.comparison.covariates.menu.R xpose4/R/autocorr.iwres.R xpose4/R/absval.wres.vs.idv.R xpose4/R/absval.dcwres.vs.cov.model.comp.R xpose4/R/xpose.multiple.plot.R xpose4/R/xlabel.R xpose4/R/fix.wrapped.lines.R xpose4/R/ind.plots.R xpose4/R/dOFV.vs.id.R xpose4/R/absval.iwres.vs.cov.bw.R xpose4/R/change.misc.graph.par.R xpose4/R/xpose.calculate.cwres.R xpose4/R/tabulate.parameters.R xpose4/R/xpose.ask.for.filename.R xpose4/R/gam.change.weights.R xpose4/R/xpPage.R xpose4/R/bootgam.plots.R xpose4/R/change.steppit.R xpose4/R/ind.plots.cwres.qq.R xpose4/R/PI.helper.R xpose4/R/cov.hist.R xpose4/R/dv.vs.ipred.R xpose4/R/basic.gof.R xpose4/R/create.rand.R xpose4/R/xpose.bin.R xpose4/R/absval.wres.vs.pred.by.cov.R xpose4/R/change.graphical.par.R xpose4/R/cov.splom.R xpose4/R/read.nm.tables.R xpose4/R/make.sb.data.R xpose4/R/ind.plots.cwres.hist.R xpose4/R/change.pi.graph.par.R xpose4/R/check.vars.R xpose4/R/another.menu.R xpose4/R/struct.gof.menu.R xpose4/R/cwres.vs.cov.R xpose4/R/cwres.menu.R xpose4/R/is.readable.file.R xpose4/R/xpose.plot.qq.R xpose4/R/bootscm.R xpose4/R/ipred.vs.idv.R xpose4/R/import.variable.definitions.R xpose4/R/xpose.stack.R xpose4/R/read.lst6.R xpose4/R/import.graph.par.R xpose4/R/change.lm.graph.par.R xpose4/R/wres.vs.idv.R xpose4/R/calc.npar.R xpose4/R/cov.qq.R xpose4/R/wres.dist.hist.R xpose4/R/xp.scope3.R xpose4/R/absval.iwres.vs.pred.R xpose4/R/parm.splom.R xpose4/R/covariate.model.menu.R xpose4/R/xsubset.R xpose4/R/simprazExample.R xpose4/R/cwres.wres.vs.pred.R xpose4/R/structural.diagnostics.menu.R xpose4/R/dOFV1.vs.dOFV2.R xpose4/R/add.log.R xpose4/R/dv.vs.ipred.by.cov.R xpose4/R/xp.akaike.plot.R xpose4/R/get.refrunno.R xpose4/R/cwres.dist.qq.R xpose4/R/create.strat.rand.R xpose4/R/absval.dpred.vs.cov.model.comp.R xpose4/R/xp.plot.R xpose4/R/eq.xpose.R xpose4/R/change.medianNorm.R xpose4/R/categorical.table.R xpose4/R/add.model.comp.R xpose4/R/dv.vs.pred.by.cov.R xpose4/R/absval.iwres.wres.vs.ipred.pred.R xpose4/R/computePI.R xpose4/R/model.comparison.menu.R xpose4/R/randtest.hist.R xpose4/R/dv.preds.vs.idv.R xpose4/R/xpose.VPC.R xpose4/R/change.bw.graph.par.R xpose4/R/export.variable.definitions.R xpose4/R/print.xpose.multiple.plot.R xpose4/R/ranpar.splom.R xpose4/R/absval.cwres.vs.cov.bw.R xpose4/R/change.cat.levels.R xpose4/R/xp.get.disp.R xpose4/R/create.xpose.plot.classes.R xpose4/R/xpose.create.title.R xpose4/R/read.npc.vpc.results.R xpose4/R/absval.wres.vs.cov.bw.R xpose4/R/xpose.panel.qq.R xpose4/R/dOFV.vs.cov.R xpose4/R/export.graph.par.R xpose4/R/xpose.plot.histogram.R xpose4/R/add.grid.text.R xpose4/R/iwres.dist.qq.R xpose4/R/absval.cwres.vs.pred.R xpose4/R/change.var.name.R xpose4/R/add.modify.db.items.menu.R xpose4/R/residual.diagnostics.menu.R xpose4/R/preferences.menu.R xpose4/R/ind.plots.wres.qq.R xpose4/R/xpose.plot.splom.R xpose4/R/parameters.menu.R xpose4/R/addit.gof.R xpose4/R/add.tad.R xpose4/R/absval.cwres.vs.pred.by.cov.R xpose4/R/wres.vs.pred.R xpose4/R/change.onlyfirst.R xpose4/R/dv.vs.pred.ipred.R xpose4/R/read.lst.R xpose4/R/check.gamobj.R xpose4/R/change.subset.R xpose4/R/change.label.par.R xpose4/R/autocorr.wres.R xpose4/R/gofSetup.R xpose4/R/runsum.R xpose4/R/cwres.wres.vs.idv.R xpose4/R/add.dichot.R xpose4/R/documentation.menu.R xpose4/R/cwres.vs.pred.R xpose4/R/gam.settings.menu.R xpose4/R/ranpar.qq.R xpose4/R/bootgam.R xpose4/R/absval.dwres.vs.cov.model.comp.R xpose4/R/xp.gam.R xpose4/R/xpose.multiple.plot.default.R xpose4/R/add.absval.R xpose4/R/nsim.R xpose4/R/xvardef.R xpose4/R/cov.summary.R xpose4/R/kaplan.plot.R xpose4/R/ranpar.hist.R xpose4/R/change.dil.graph.par.R xpose4/R/main.menu.R xpose4/R/change.parm.R xpose4/R/create.mirror.R xpose4/R/read.TTE.sim.data.R xpose4/R/continuous.table.R xpose4/R/absval.wres.vs.pred.R xpose4/R/change.xvardef.R xpose4/R/absval.diwres.vs.cov.model.comp.R xpose4/R/xpose.panel.default.R xpose4/R/read.phi.R xpose4/R/autocorr.cwres.R xpose4/R/change.cat.cont.R xpose4/R/absval.iwres.vs.ipred.by.cov.R xpose4/R/xpose4.R xpose4/R/xpose.plot.bw.R xpose4/R/data.checkout.R xpose4/R/xpose.print.R xpose4/R/parm.hist.R xpose4/R/read.vpctab.R xpose4/R/dv.vs.pred.by.idv.R xpose4/R/xp.cook.R xpose4/R/xpose.dev.new.R xpose4/R/change.miss.R xpose4/R/create.parameter.list.R xpose4/R/xp.ind.inf.terms.R xpose4/R/SData.R xpose4/R/xpose.panel.splom.R xpose4/R/wres.dist.qq.R xpose4/R/bootgam.menu.R xpose4/R/absval.dipred.vs.cov.model.comp.R xpose4/R/xpose.panel.histogram.R xpose4/R/ind.plots.wres.hist.R xpose4/R/cat.dv.vs.idv.sb.R xpose4/R/cwres.vs.idv.bw.R xpose4/R/xpose.license.citation.R xpose4/R/cwres.vs.idv.R xpose4/R/dv.vs.ipred.by.idv.R xpose4/R/parm.summary.R xpose4/R/parm.qq.R xpose4/R/basic.model.comp.R xpose4/R/change.ab.graph.par.R xpose4/R/pred.vs.idv.R xpose4/R/change.cond.graph.par.R xpose4/R/xpose.write.R xpose4/R/xpose.gam.R xpose4/R/runsum.print.R xpose4/R/xpose.string.print.R xpose4/R/xpose.panel.bw.R xpose4/R/iwres.vs.idv.R xpose4/R/add.grid.table.R xpose4/R/add.exp.R xpose4/R/gof.R xpose4/R/absval.iwres.vs.idv.R xpose4/R/db.names.R xpose4/R/dv.vs.idv.R xpose4/R/xpose.plot.default.R xpose4/R/xpose.data.R xpose4/R/reset.graph.par.R xpose4/R/read.lst7.R xpose4/R/dv.vs.pred.R xpose4/R/change.xlabel.R xpose4/R/parm.vs.parm.R xpose4/R/xpose.VPC.categorical.R xpose4/R/vpc.npc.menu.R xpose4/R/set.doc.R xpose4/R/absval.iwres.vs.ipred.R xpose4/R/change.dv.cat.levels.R xpose4/R/iwres.dist.hist.R xpose4/R/createXposeClasses.R xpose4/R/xp.check.scope.R xpose4/R/wres.vs.cov.R xpose4/R/xp.ind.inf.fit.R xpose4/R/zzz.R xpose4/R/cwres.dist.hist.R xpose4/R/list.gam.settings.R xpose4/R/absval.iwres.cwres.vs.ipred.pred.R xpose4/R/boot.hist.R xpose4/R/change.dispersion.R xpose4/R/gof.menu.R xpose4/R/xp.ind.stud.res.R xpose4/R/cat.pc.R xpose4/R/change.use.ids.R xpose4/R/parm.vs.cov.R xpose4/R/cwres.vs.pred.bw.R xpose4/R/npc.coverage.R xpose4/R/gam.menu.R
xpose4/README.md
xpose4/MD5
xpose4/DESCRIPTION
xpose4/man
xpose4/man/xpose.create.title.text.Rd xpose4/man/ranpar.vs.cov.Rd xpose4/man/xvardef.Rd xpose4/man/wres.vs.pred.Rd xpose4/man/cwres.vs.idv.Rd xpose4/man/xpose.gam.Rd xpose4/man/xpose4classic-internal.Rd xpose4/man/dOFV.vs.id.Rd xpose4/man/ind.plots.wres.hist.Rd xpose4/man/xpose.prefs-class.Rd xpose4/man/xpose.dev.new.Rd xpose4/man/xp.boot.par.est.corr.Rd xpose4/man/xp.inc.prob.Rd xpose4/man/randtest.hist.Rd xpose4/man/xp.dofv.plot.Rd xpose4/man/addit.gof.Rd xpose4/man/parm.vs.cov.Rd xpose4/man/autocorr.cwres.Rd xpose4/man/dv.vs.ipred.Rd xpose4/man/db.names.Rd xpose4/man/xpose.create.title.Rd xpose4/man/tables.Rd xpose4/man/export.variable.definitions.Rd xpose4/man/cwres.dist.hist.Rd xpose4/man/absval.wres.vs.pred.Rd xpose4/man/parm.vs.parm.Rd xpose4/man/xpose4generic-package.Rd xpose4/man/dv.vs.pred.by.cov.Rd xpose4/man/wres.vs.idv.bw.Rd xpose4/man/basic.gof.Rd xpose4/man/ind.plots.wres.qq.Rd xpose4/man/xpose.VPC.categorical.Rd xpose4/man/basic.model.comp.Rd xpose4/man/simpraz.xpdb.Rd xpose4/man/autocorr.wres.Rd xpose4/man/xpose.string.print.Rd xpose4/man/dOFV1.vs.dOFV2.Rd xpose4/man/absval.cwres.vs.pred.by.cov.Rd xpose4/man/dist.qq.Rd xpose4/man/iwres.dist.hist.Rd xpose4/man/splom.Rd xpose4/man/absval.wres.vs.pred.by.cov.Rd xpose4/man/xp.incl.index.cov.comp.Rd xpose4/man/simprazExample.Rd xpose4/man/change.xlabel.Rd xpose4/man/xpose.VPC.both.Rd xpose4/man/read.vpctab.Rd xpose4/man/internal.functions.Rd xpose4/man/cat.pc.Rd xpose4/man/read.TTE.sim.data.Rd xpose4/man/xpose4data-package.Rd xpose4/man/xpose.VPC.Rd xpose4/man/cwres.vs.cov.Rd xpose4/man/change.var.name.Rd xpose4/man/dv.vs.ipred.by.cov.Rd xpose4/man/xp.incl.index.cov.ind.Rd xpose4/man/functions-data.Rd xpose4/man/ipred.vs.idv.Rd xpose4/man/runsum.Rd xpose4/man/xpose.plot.default.Rd xpose4/man/iwres.dist.qq.Rd xpose4/man/create.xpose.plot.classes.Rd xpose4/man/xpose.plot.bw.Rd xpose4/man/dv.vs.idv.Rd xpose4/man/xp.boot.par.est.Rd xpose4/man/functions-generic.Rd xpose4/man/bootscm.import.Rd xpose4/man/tabulate.parameters.Rd xpose4/man/dv.vs.ipred.by.idv.Rd xpose4/man/read.nm.output.Rd xpose4/man/iwres.vs.idv.Rd xpose4/man/absval.delta.vs.cov.model.comp.Rd xpose4/man/Data.Rd xpose4/man/kaplan.plot.Rd xpose4/man/cwres.dist.qq.Rd xpose4/man/pred.vs.idv.Rd xpose4/man/wres.vs.idv.Rd xpose4/man/read.npc.vpc.results.Rd xpose4/man/absval.iwres.vs.ipred.Rd xpose4/man/wres.vs.cov.Rd xpose4/man/xpose.panel.histogram.Rd xpose4/man/change.parm.Rd xpose4/man/wres.dist.hist.Rd xpose4/man/xpose.multiple.plot.default.Rd xpose4/man/xpose4data-internal.Rd xpose4/man/cat.dv.vs.idv.sb.Rd xpose4/man/dOFV.vs.cov.Rd xpose4/man/createXposeClasses.Rd xpose4/man/xp.inc.stab.cov.Rd xpose4/man/import.graph.par.Rd xpose4/man/xlabel.Rd xpose4/man/xpose.plot.qq.Rd xpose4/man/import.variable.definitions.Rd xpose4/man/dv.vs.pred.ipred.Rd xpose4/man/change.misc.parameters.Rd xpose4/man/xp.incl.index.cov.Rd xpose4/man/xp.inc.prob.comb.2.Rd xpose4/man/xpose4classic-package.Rd xpose4/man/xpose4specific-internal.Rd xpose4/man/absval.wres.vs.idv.Rd xpose4/man/functions-classic.Rd xpose4/man/xpose.plot.histogram.Rd xpose4/man/print.xpose.multiple.plot.Rd xpose4/man/cwres.wres.vs.idv.Rd xpose4/man/xpose.data.Rd xpose4/man/dv.vs.pred.Rd xpose4/man/xsubset.Rd xpose4/man/absval.iwres.vs.pred.Rd xpose4/man/xpose.panel.default.Rd xpose4/man/cwres.vs.pred.Rd xpose4/man/xpose.multiple.plot.Rd xpose4/man/xpose.data-class.Rd xpose4/man/create.mirror.Rd xpose4/man/xpose.plot.splom.Rd xpose4/man/xpose4specific-package.Rd xpose4/man/read.nm.tables.Rd xpose4/man/xpose.panel.bw.Rd xpose4/man/dist.hist.Rd xpose4/man/make.sb.data.Rd xpose4/man/absval.cwres.vs.cov.bw.Rd xpose4/man/absval.cwres.vs.pred.Rd xpose4/man/nsim.Rd xpose4/man/add.grid.table.Rd xpose4/man/xpose.panel.qq.Rd xpose4/man/ind.plots.Rd
xpose4/man/dv.preds.vs.idv.rd
xpose4/man/compute.cwres.Rd xpose4/man/xpose4-package.Rd xpose4/man/cwres.vs.idv.bw.Rd xpose4/man/change.graphical.parameters.Rd xpose4/man/wres.vs.pred.bw.Rd xpose4/man/xpose4psn-package.Rd xpose4/man/cwres.vs.pred.bw.Rd xpose4/man/npc.coverage.Rd xpose4/man/dv.vs.pred.by.idv.Rd xpose4/man/boot.hist.Rd xpose4/man/wres.dist.qq.Rd xpose4/man/absval.iwres.wres.vs.ipred.pred.Rd xpose4/man/xpose.ask.for.filename.Rd xpose4/man/export.graph.par.Rd xpose4/man/summary.Rd xpose4/man/absval.iwres.vs.ipred.by.cov.Rd xpose4/man/absval.wres.vs.cov.bw.Rd xpose4/man/add.functions.Rd xpose4/man/add.model.comp.Rd xpose4/man/xpose.license.citation.Rd xpose4/man/xp.distr.mod.size.Rd xpose4/man/reset.Rd xpose4/man/xpose.panel.splom.Rd xpose4/man/xpose.yscale.components.log10.Rd xpose4/man/data.checkout.Rd xpose4/man/gof.Rd xpose4/man/change.xvardef.Rd xpose4/man/bootgam.print.Rd xpose4/man/xp.gam.Rd

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