boot.hist: Function to create histograms of results from the 'bootstrap'...

In xpose4: Diagnostics for Nonlinear Mixed-Effect Models

Function to create histograms of results from the bootstrap tool in PsN

Description

Reads results from the bootstrap tool in PsN and then creates histograms.

Usage

boot.hist(
  results.file = "raw_results_run1.csv",
  incl.ids.file = "included_individuals1.csv",
  min.failed = FALSE,
  cov.failed = FALSE,
  cov.warnings = FALSE,
  boundary = FALSE,
  showOriginal = TRUE,
  showMean = FALSE,
  showMedian = FALSE,
  showPCTS = FALSE,
  PCTS = c(0.025, 0.975),
  excl.id = c(),
  layout = NULL,
  sort.plots = TRUE,
  main = "Default",
  ...
)

Arguments

results.file	The location of the results file from the bootstrap tool in PsN
incl.ids.file	The location of the included ids file from the bootstrap tool in PsN
min.failed	Should NONMEM runs that had failed minimization be skipped? TRUE or FALSE
cov.failed	Should NONMEM runs that had a failed covariance step be skipped? TRUE or FALSE
cov.warnings	Should NONMEM runs that had covariance step warnings be skipped? TRUE or FALSE
boundary	Should NONMEM runs that had boundary warnings be skipped? TRUE or FALSE
showOriginal	Should we show the value from the original NONMEM run in the histograms? TRUE or FALSE
showMean	Should we show the mean of the histogram data? TRUE or FALSE
showMedian	Should we show the median of the histogram data? TRUE or FALSE
showPCTS	Should we show the percentiles of the histogram data? TRUE or FALSE
PCTS	the percentiles to show. Can be a vector of any length. For example, c(0.05,0.2,0.5,0.7)
excl.id	Vector of id numbers to exclude.
layout	Layout of plots. A vector of number of rows and columns in each plot. c(3,3) for example.
sort.plots	Should the plots be sorted based on type of parameter. Sorting on parameters, standard errors, shrinkage and eigenvalues.
main	The title of the plot.
...	Additional arguments that can be passed to xpose.plot.histogram, xpose.panel.histogram, histogram and other lattice-package functions.

Value

A lattice object

Author(s)

Andrew Hooker

References

PsN

See Also

xpose.plot.histogram, xpose.panel.histogram, histogram and other lattice-package functions.

Other PsN functions: bootscm.import(), npc.coverage(), randtest.hist(), read.npc.vpc.results(), read.vpctab(), xpose.VPC(), xpose.VPC.both(), xpose.VPC.categorical(), xpose4-package

Examples

## Not run: 
boot.hist(results.file="./boot1/raw_results_run1.csv", 
          incl.ids.file="./boot1/included_individuals1.csv")

## End(Not run)

xpose4 documentation built on May 29, 2024, 7:56 a.m.