Man pages for yatah
Yet Another TAxonomy Handler

abundancesAbundance table for 199 samples.
all_ranksRanks handled by 'yatah'
deprecatedDeprecated functions
depthCommon depth
dot-allchrCharacters allowed in lineages
error_lineageThrow error if the string is not a lineage
get_all_cladesExtract all clades present in the lineages
get_cladeExtract the clade of a desired rank in a lineage
get_last_cladeExtract the last clade of a lineage
get_last_rankExtract the last rank of a lineage
is_cladeTest if a lineage belongs to a clade
is_lineageTest if a string is a lineage
is_rankTest if a lineage goes down to a specified rank
taxtableTaxonomic table
taxtreeTaxonomic tree
trim_commonTrim lineages until the shallowest common rank.
trim_rankTrim lineages until a specified rank
trim_voidTrim void ranks in lineages
yatah-packageyatah: Yet Another TAxonomy Handler
yatah documentation built on May 29, 2024, 6:11 a.m.