is_rank: Test if a lineage goes down to a specified rank
In yatah: Yet Another TAxonomy Handler

is_rank

R Documentation

Test if a lineage goes down to a specified rank

Description

Test if a lineage goes down to a specified rank

Usage

is_rank(
  lineage,
  rank = c("kingdom", "phylum", "class", "order", "family", "genus", "species", "strain")
)

Arguments

`lineage`	string. Vector of lineages.
`rank`	string. One of `c("kingdom", "phylum", "class", "order", "family", "genus", "species", "strain")` with partial matching.

Value

logical.

Examples

lineage1 <- "k__Bacteria|p__Verrucomicrobia|c__Verrucomicrobiae"
lineage2 <- "k__Bacteria|p__Firmicutes|c__Clostridia"
is_rank(c(lineage1, lineage2), "class")
is_rank(c(lineage1, lineage2), "order")

yatah documentation built on Nov. 13, 2022, 1:07 a.m.