taxtable: Taxonomic table

Description Usage Arguments Details Value Examples

View source: R/taxtable.R

Description

Compute taxonomic table from lineages.

Usage

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taxtable(lineage)

Arguments

lineage

string. Vector of lineages.

Details

Duplicated lineages are removed.

Value

A data.frame with columns corresponding to different ranks.

Examples

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lineage1 <- "k__Bacteria|p__Verrucomicrobia|c__Verrucomicrobiae"
lineage2 <- "k__Bacteria|p__Firmicutes|c__Clostridia"
lineage3 <- "k__Bacteria|p__Firmicutes|c__Bacilli"
taxtable(c(lineage1, lineage2, lineage3))

yatah documentation built on March 1, 2020, 5:08 p.m.