taxtable: Taxonomic table
In yatah: Yet Another TAxonomy Handler
taxtable R Documentation
Taxonomic table
Description
Compute taxonomic table from lineages.
Usage
taxtable(lineage)
Arguments
lineage
string. Vector of lineages.
Details
Duplicated lineages are removed.
Value
A data.frame with columns corresponding to different ranks.
Examples
lineage1 <- "k__Bacteria|p__Verrucomicrobia|c__Verrucomicrobiae"
lineage2 <- "k__Bacteria|p__Firmicutes|c__Clostridia"
lineage3 <- "k__Bacteria|p__Firmicutes|c__Bacilli"
taxtable(c(lineage1, lineage2, lineage3))
yatah documentation built on May 29, 2024, 6:11 a.m.
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| taxtable | R Documentation |
Taxonomic table
Description
Compute taxonomic table from lineages.
Usage
taxtable(lineage)
Arguments
lineage |
string. Vector of lineages. |
Details
Duplicated lineages are removed.
Value
A data.frame with columns corresponding to different ranks.
Examples
lineage1 <- "k__Bacteria|p__Verrucomicrobia|c__Verrucomicrobiae"
lineage2 <- "k__Bacteria|p__Firmicutes|c__Clostridia"
lineage3 <- "k__Bacteria|p__Firmicutes|c__Bacilli"
taxtable(c(lineage1, lineage2, lineage3))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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