bait: Extract bait, prey, participant, inhibitor, pubmed,...
In Accio/RpsiXML: R interface to PSI-MI 2.5 files

Description Usage Arguments Value Author(s) References See Also Examples

The functions return bait/prey UniProt identifier of the given psimi25Interaction object.

bait(x,...)
prey(x,...)
participant(x,...)
inhibitor(x,...)
pubmedID(x,...)
confidenceValue(x,...)
neutralComponent(x,...)

`x`	An object of `psimi25Interaction-class`, see example
`...`	Other parameters to control the identifier returned, not implemented yet

The source database identifier is returned.

Jitao David Zhang <jitao_david.zhang@roche.com>, Tony Chiang <tchiang@ebi.ac.uk>

The UniProt database http://www.expasy.uniprot.org/

psimi25Interaction-class

xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

gridxml <- file.path(xmlDir, "biogrid_200804_test.xml.gz")
gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25)

interExp <- interactions(gridSet)[[1]]
bait(interExp)
prey(interExp)