translateID-methods: Translate interactors into other identifiers
In Accio/RpsiXML: R interface to PSI-MI 2.5 files
Description
The method finds any annotation IDs of of
psimi25Graph-class or
psimi25Hypergraph-class or
psimi25Interactor-class
Methods
- r = "psimi25Graph"
An object of
psimi25Graph-class. It replaces the nodes with
translated IDs and returns a new psimi25Graph object back.
- r = "psimi25Hypergraph"
An object of
psimi25Hypergraph-class. Since the nodes of
psimi25Hypergraph are not mutable, this method accepts a UniProt ID of
interactors and returns the translated ID back. NA is also acceptable,
which can be used to check interactors without mapping to UniProt
- r = "list"
A list of psimi25Interactor-class,
returns a vector of translated identifiers back
- r = "psimi25Interactor"
An object of
psimi25Interactor-class, returns translated
identifier. Before using the method it is advisable to used xref(x)
method to check which cross references are provided.
Accio/RpsiXML documentation built on May 7, 2021, 12:08 a.m.
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Description
The method finds any annotation IDs of of
psimi25Graph-class or
psimi25Hypergraph-class or
psimi25Interactor-class
Methods
- r = "psimi25Graph"
An object of
psimi25Graph-class. It replaces the nodes with translated IDs and returns a new psimi25Graph object back.- r = "psimi25Hypergraph"
An object of
psimi25Hypergraph-class. Since the nodes of psimi25Hypergraph are not mutable, this method accepts a UniProt ID of interactors and returns the translated ID back. NA is also acceptable, which can be used to check interactors without mapping to UniProt- r = "list"
A list of
psimi25Interactor-class, returns a vector of translated identifiers back- r = "psimi25Interactor"
An object of
psimi25Interactor-class, returns translated identifier. Before using the method it is advisable to used xref(x) method to check which cross references are provided.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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