psimi25Complex-class: Class "psimi25Complex"

In Accio/RpsiXML: R interface to PSI-MI 2.5 files

Description

A class representing complex data

Objects from the Class

Objects can be created by calls of parsePsimi25Complex

Slots

sourceDb:

Object of class "character", short label of the source database

sourceId:

Object of class "character", complex ID of the source database

shortLabel:

Object of class "character", short label of the complex

fullName:

Object of class "character", full name of the complex

interactorRef:

Object of class "character", reference ID of the interactor

organismName:

Object of class "character", orgnism name

taxId:

Object of class "character", taxonomy ID

members:

Object of class "data.frame", members (UniProt ID if available)

attributesList:

A list of attributes of the complex, each as an object of psimi25Attribute object

Methods

show

signature(object = "psimi25Complex"): shows information of the complex

sourceDb

signature(x = "psimi25Complex"): returns source database

sourceId

signature(x = "psimi25Complex"): returns source ID

attributesList

signature(x = "psimi25Complex"): returns attributes of the complex

members

signature(x = "psimi25Complex"): returns members of the complex

complexName

signature(x = "psimi25Complex"): returns complex name

Author(s)

Jitao David Zhang <[e-mail]>, Tony Chiang <[e-mail]>

See Also

parsePsimi25Complex

Examples

showClass("psimi25Complex")

Accio/RpsiXML documentation built on May 7, 2021, 12:08 a.m.