interactorInfo: Interactor info in a matrix

Description Usage Arguments Value Author(s) See Also Examples

Description

The function returns the essential information of interactors in a matrix. Xrefs are left out since they have arbitrary numbers of annotation and cannot be summarized into a matrix.

Usage

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Arguments

x

An object which contains psimi25Interactor information, for example objects of psimi25InteractionEntry-class, psimi25Graph-class, psimi25Hypergraph-class or psimi25ComplexEntry-class

.

Value

A matrix of interactor information, each row represents an interactor The columns are

sourceDb

source database

sourceId

source database index

shortLabel

short label assigned by the source database

uniprotId

UniProt ID, NA if not available

organismName

the organism of the interactor protein

Author(s)

Jitao David Zhang <jitao_david.zhang@roche.com>

See Also

xref, availableXrefs

Examples

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xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

hprdxml <- file.path(xmlDir, "hprd_200709_test.xml.gz")
hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25)

hprdInteractorInfo <- interactorInfo(hprdSet)

Accio/RpsiXML documentation built on May 7, 2021, 12:08 a.m.