interactorInfo: Interactor info in a matrix
In Accio/RpsiXML: R interface to PSI-MI 2.5 files

Description Usage Arguments Value Author(s) See Also Examples

The function returns the essential information of interactors in a matrix. Xrefs are left out since they have arbitrary numbers of annotation and cannot be summarized into a matrix.

1	interactorInfo(x)

`x`	An object which contains psimi25Interactor information, for example objects of `psimi25InteractionEntry-class`, `psimi25Graph-class`, `psimi25Hypergraph-class` or `psimi25ComplexEntry-class`

A matrix of interactor information, each row represents an interactor The columns are

`sourceDb`	source database
`sourceId`	source database index
`shortLabel`	short label assigned by the source database
`uniprotId`	UniProt ID, NA if not available
`organismName`	the organism of the interactor protein

Jitao David Zhang <jitao_david.zhang@roche.com>

xref, availableXrefs

xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

hprdxml <- file.path(xmlDir, "hprd_200709_test.xml.gz")
hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25)

hprdInteractorInfo <- interactorInfo(hprdSet)