Man pages for Albluca/rpgraph
r interface to VDAOEngine to build elastic principal graphs
| accuracyComplexityPlot | Title |
| ApplytoData | Title |
| CategoriesOnPath | Title |
| CheckAndGetPath | Title |
| CheckDirectionality | Title |
| CircCor | Title |
| CircleConfiguration | Define the grammar to produde a circular principal graph |
| CircShift | Title |
| computeElasticPrincipalGraph | Compute the elastic principal graph |
| computeElPT | Compute the the elastic principal graph |
| ConstructGraph | Title |
| ConvertNames | Conversion between gene naming convenctions and organisms |
| CountPubmedResults | Count pubmed results |
| CurveConfiguration | Define the grammar to produde a curve (a path) principal... |
| DefaultPrincipalTreeConfiguration | Define the grammar to produde a tree principal graph |
| DistanceStatistics | Title |
| ExtendImplicitStaging | Title |
| GeneExpressiononPath | Title |
| GetDirectionalityIndex | Title |
| GetLongestPath | Title |
| getTaxonMap | Project a set of datapoints onto the nodes of principal graph |
| hello | Hello, World! |
| LoadMatrixMarket | Title |
| makeGraph | Produce a graph structure from the coputed elastic principal... |
| OrderOnPath | Title |
| PCAOutLiers | Title |
| plotData2D | Title |
| plotData3D | Plot dqta in 3 dimensions |
| plotMSDEnergyPlot | Title |
| PlotOnPath | Title |
| plotPieNet | Title |
| ProjectOnCircle | Title |
| ProjectOnPrincipalGraph | Title |
| projectPoints | Project Points on the edges of the graph |
| Rand.POrd.Cor | Sample correlation with partial order |
| RobustPrincipalTreeConfiguration | Define the grammar to produde a robust tree principal graph |
| SelectComputePCA | Compute the PCA for a given numeric matrix usig different... |
| SelectVM | Title |
| TwoStagesRobustPrincipalTreeConfiguration | Define the grammar to produde a tree principal graph using a... |
