ConvertNames: Conversion between gene naming convenctions and organisms

Description Usage Arguments Examples

Description

Conversion between gene naming convenctions and organisms

Usage

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ConvertNames(SourceOrganism, TargetOrganism, Genes, SourceTypes = "Names",
  TargetTypes = "Names", HomologyLevel = 1)

Arguments

SourceOrganism

Source organism (currently either "human" or "mouse")

TargetOrganism

Target organism (currently either "human" or "mouse")

Genes

Vector of strings containing gene names. NAs can be present and will be removed

SourceTypes

Type of gene names used as input (currently either "Names" or "Ensembl"). Default is "Names".

TargetTypes

Type of gene names to be returned (currently either "Names" or "Ensembl"). Default is "Names".

HomologyLevel

minimal level of homology (1 by default)

Examples

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GenNames <- c("CCND3", "CD151", "CD2BP2", "CD81", "CDC34", "CDC37", "CDC42BPB", "CDC42EP1","CDC42EP4")

ConvertNames("human", "mouse", SourceTypes = "Names", TargetTypes = "Names", GenNames)

MoN <- ConvertNames("human", "mouse", SourceTypes = "Names", TargetTypes = "Names", GenNames)
MoEn <- ConvertNames("human", "mouse", SourceTypes = "Names", TargetTypes = "Ensembl", GenNames)

ConvertNames("mouse", "human", SourceTypes = "Names", TargetTypes = "Names", MoN)
ConvertNames("mouse", "human", SourceTypes = "Ensembl", TargetTypes = "Ensembl", MoEn)

Albluca/rpgraph documentation built on May 5, 2019, 1:35 p.m.