Files in Albluca/rpgraph
r interface to VDAOEngine to build elastic principal graphs

.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/LoadData.R R/Web.R R/_DevelopPckg.R R/conversions.R R/dashboards.R R/expression.R R/filtering.R R/graphs.R R/pca.r R/pipelines.R R/plotting.R R/principal_graphs.R R/projections.R R/staging.R R/utilities.R R/zzz.R README.Rmd README.md
data/HumanGenes_GOCellCycle.rda
data/HumanGenes_GODNAReplication.rda
data/MouseENS_KowaCellCycle.rda
data/MouseGenes_GOCellCycle.rda
data/MouseGenes_GODNAReplication.rda
data/MouseGenes_KowaCellCycle.rda
data/StageAssociation_Whit.rda
data/StageAssociation_Whit_Coarse.rda
data/StageAssociation_Whit_Coarse_G0.rda
data/StageAssociation_Whit_Ext.rda
data/StageAssociation_Whit_G0.rda
data/simple_circle.rda
data/simple_iris.rda
data/simple_tree.rda
doc/circle.Rmd doc/circle.md
doc/circle_files/figure-markdown_github/unnamed-chunk-10-1.png
doc/circle_files/figure-markdown_github/unnamed-chunk-11-1.png
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doc/curve.Rmd doc/curve.md
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doc/javapar.Rmd doc/javapar.md
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doc/mix.Rmd doc/mix.md
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doc/proj.Rmd doc/proj.md
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doc/step.Rmd doc/step.md
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doc/step_files/figure-markdown_github/unnamed-chunk-3-9.png
doc/tree.Rmd doc/tree.md
doc/tree_files/figure-markdown_github/unnamed-chunk-12-1(1).png
doc/tree_files/figure-markdown_github/unnamed-chunk-12-1.png
doc/tree_files/figure-markdown_github/unnamed-chunk-2-1(1).png
doc/tree_files/figure-markdown_github/unnamed-chunk-2-1.png
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examples/Buettner.R examples/BuettnerV2.R examples/CompareOtherTools.R examples/Differentiation.R examples/FinalCombination.R examples/MostRecent.R examples/PutAllTogether.R examples/TestConvergence2.R examples/Trapnel.R
images/.DS_Store
images/circle/AccCompCirc.png
images/circle/AccCompCirc1.png
images/circle/MSDCirc.png
images/circle/PieChr.png
images/circle/Plot2D.png
images/circle/Plot2D_10.png
images/circle/Plot2D_20.png
images/circle/Plot3D.png
inst/java/VDAOEngine.jar
inst/java/colt.jar
man/ApplytoData.Rd man/CategoriesOnPath.Rd man/CheckAndGetPath.Rd man/CheckDirectionality.Rd man/CircCor.Rd man/CircShift.Rd man/CircleConfiguration.Rd man/ConstructGraph.Rd man/ConvertNames.Rd man/CountPubmedResults.Rd man/CurveConfiguration.Rd man/DefaultPrincipalTreeConfiguration.Rd man/DistanceStatistics.Rd man/ExtendImplicitStaging.Rd man/GeneExpressiononPath.Rd man/GetDirectionalityIndex.Rd man/GetLongestPath.Rd man/LoadMatrixMarket.Rd man/OrderOnPath.Rd man/PCAOutLiers.Rd man/PlotOnPath.Rd man/ProjectOnCircle.Rd man/ProjectOnPrincipalGraph.Rd man/Rand.POrd.Cor.Rd man/RobustPrincipalTreeConfiguration.Rd man/SelectComputePCA.Rd man/SelectVM.Rd man/TwoStagesRobustPrincipalTreeConfiguration.Rd man/accuracyComplexityPlot.Rd man/computeElPT.Rd man/computeElasticPrincipalGraph.Rd man/getTaxonMap.Rd man/hello.Rd man/makeGraph.Rd man/plotData2D.Rd man/plotData3D.Rd man/plotMSDEnergyPlot.Rd man/plotPieNet.Rd man/projectPoints.Rd
rpgraph.Rproj
vignettes/Intro.Rmd vignettes/Simple_Examples.Rmd
Albluca/rpgraph documentation built on Aug. 5, 2017, 3:39 a.m.