Plot dqta in 3 dimensions
1 2 3 4 5 6 | plotData3D(Data, PrintGraph, GroupsLab, ScaleFunction = sqrt,
NodeSizeMult = 1, Col = NULL, CirCol = "black", LineCol = "black",
IdCol = "blue", Main = "", Cex.Main = 0.7, PlotProjections = FALSE,
ProjectionLines = NULL, TaxonList = NULL, OnEdgeProjections = NULL,
Xlab = "PC1", Ylab = "PC2", Zlab = "PC3", DirectionMat = NULL,
Thr = 0.05, Plot.ly = FALSE)
|
Data |
The Data to be plotted. Each column represents a dimension and each row represents a point |
PrintGraph |
A princial graph structure obtained by computeElasticPrincipalGraph |
GroupsLab |
A vector of labels to indicate which group each point belongs to |
ScaleFunction |
A scaling function to decide the size of the spheres that represent the nodes of the principal graph |
NodeSizeMult |
A scaling vector to decide the size of the spheres that represent the nodes of the principal graph |
Col |
A vector of colors for the points. If NULL the cplors will be computed automatically |
CirCol |
The color of the Spheres (it will be partially transparent) |
LineCol |
The colors of the edtges of the graph |
IdCol |
The color of the labels of the nodes of the graph |
Main |
The title of the plot |
Cex.Main |
The multiplier associated with the title of the plot |
PlotProjections |
Should the line projecting points on the nodes to be plotted? |
ProjectionLines |
A vector of colors for the projection lines (used only if Plot.ly = FALSE) |
TaxonList |
A list of associations between points and nodes produced by getTaxonMap |
Xlab |
The label of the x axis |
Ylab |
The label of the y axis |
Zlab |
The label of the z axis |
DirectionMat |
A directionality structure produced by CheckDirectionality |
Thr |
A threshold to be used for directionality reconstruction |
Plot.ly |
A boolen indicating if Plot.ly (TRUE) or rgl (FALSE) should be used |
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