Man pages for AlexGa/GraftingScripts
Reproducible scripts for studying the graft formation
| adjust_and_split | Adjust list of p-value matrices |
| barplot_graft_formation | Barplot of up- and down- regulated differentially expressed... |
| barplot_up_down | Barplot of up- and down- regulated differentially expressed... |
| Compute_GO_Enrichment | Plot dendrogram colored by sample definition |
| do_fisher_up_down | Fisher test for transcriptional overlap |
| exp.data | Expression data set of grafting. |
| fc.list | List of foldchanges |
| groupS | Vector containing groups for summarized samples |
| intersect.analysis | Intersection analysis |
| ml.list.down | List of marginal likelihoods of downregulated genes compared... |
| ml.list.up | List of marginal likelihoods of upregulated genes compared to... |
| plot_colored_dendrogram | Plot dendrogram colored by sample definition |
| plotPCA | Principle component analysis (PCA) or multidimensional... |
| test_sym_asym | Fisher test to check significance of overlap |
