test_sym_asym: Fisher test to check significance of overlap
In AlexGa/GraftingScripts: Reproducible scripts for studying the graft formation
Description
Usage
Arguments
Author(s)
Description
Calculate significance of overlap between two gene sets
Usage
1
test_sym_asym(gene_set_1, gene_set_2, number_genes_complete, alternative = "greater")
Arguments
gene_set_1
character vector containing gene ids of first gene set
gene_set_2
character vector containing gene ids of second gene set
number_genes_complete
number of genes in the complete dataset
alternative
character string indicating the alternative hypothesis and must be one of "two.sided" (default), "greater", or "less". Details fisher.test
Author(s)
Alexander Gabel
AlexGa/GraftingScripts documentation built on May 26, 2019, 9:34 a.m.
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Description Usage Arguments Author(s)
Description
Calculate significance of overlap between two gene sets
Usage
1 | test_sym_asym(gene_set_1, gene_set_2, number_genes_complete, alternative = "greater")
|
Arguments
gene_set_1 |
character vector containing gene ids of first gene set |
gene_set_2 |
character vector containing gene ids of second gene set |
number_genes_complete |
number of genes in the complete dataset |
alternative |
character string indicating the alternative hypothesis and must be one of "two.sided" (default), "greater", or "less". Details fisher.test |
Author(s)
Alexander Gabel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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