Compute_GO_Enrichment: Plot dendrogram colored by sample definition

Description Usage Arguments Value Author(s)

Description

Does a hierarchical clustering of the data and draws a dendrogam with colored branches and leaved based on the sample definition.

Usage

1
Compute_GO_Enrichment(geneUniverse, selectedGeneIds, pvalueCutoff=0.05, ontology="BP")

Arguments

geneUniverse

vector containing all gene ids of the whole dataset

selectedGeneIds

vector containing subset of gene ids to check if their GO terms are enriched

pvalueCutoff

numeric value defining the p-value cutoff for the adjusted p-values to call a GO term significantly enriched (default: 0.05)

ontology

character string defining the GO ontology and must be one of "BP", "CC", or "MF"

Value

a list

Author(s)

Alexander Gabel


AlexGa/GraftingScripts documentation built on May 26, 2019, 9:34 a.m.