barplot_up_down: Barplot of up- and down- regulated differentially expressed...

In AlexGa/GraftingScripts: Reproducible scripts for studying the graft formation

Description

Plots the relative or absolute number of up- and down- regulated genes and a asterisks if the ratio is significant

Usage

barplot_up_down(up_mat, down_mat, p_val_mat, ylim = c(-1.2,1.45), names.arg, main, labels, ylab="Proportion of overlap")

Arguments

up_mat, down_mat	(relative) number of up or down regulated genes
p_val_mat	matrix of p-values for each time point and each treatment. Indicating if ratio of up- and down- regulated genes is significant compared to the background.
ylim	defines the limits of the y-axis
names.arg	defines the names of the bars. Details: barplot
main	defines the title of the plot
labels	defines the labels of the x-axis
ylab	defines the label of the y-axis

Value

a barplot

Author(s)

Alexander Gabel

AlexGa/GraftingScripts documentation built on May 26, 2019, 9:34 a.m.