cxheatmap: Heatmap plotting with ComplexHeatmap

In AlexanderKirchmair/datamisc: Various functions for data handling

Heatmap plotting with ComplexHeatmap

Description

Heatmap plotting with ComplexHeatmap

Usage

cxheatmap(
  data,
  rowdf = NULL,
  coldf = NULL,
  scale = FALSE,
  cluster_rows = NULL,
  cluster_cols = NULL,
  rowdf_side = "left",
  coldf_side = "top",
  rowdf_legend = TRUE,
  coldf_legend = TRUE,
  legend_border = "black",
  anno_border = "black",
  fontsize = 12,
  rowcex = NULL,
  colcex = 1,
  rownames_width = 0.3,
  colnames_width = 0.3,
  heatpal = NULL,
  border = NULL,
  title = NULL,
  colors = NULL,
  inf = F,
  na = 0,
  mat = NULL,
  markoob = FALSE,
  markshape = 4,
  marksize = NULL,
  na_col = "grey",
  maxchar = 35,
  ...
)

Arguments

data	matrix or dataframe
rowdf	dataframe with row annotations
coldf	dataframe with column annotations
scale	z-scale 'rows' or 'cols'
cluster_rows	cluster rows
cluster_cols	cluster columns
rowdf_side	left/right
coldf_side	top/bottom
rowdf_legend	show rowdf legend
coldf_legend	show coldf legend
legend_border	border of legends
fontsize	base fontsize
rowcex	sizefactor for row annotations
colcex	sizefactor for col annotations
heatpal	color palette ('circlize::colorRamp2')
border	cell border
title	title of colorscale legend
colors	list of colors for annotations
inf	handling of Inf values for clustering
na	handling of NA values for clustering
mat	logical matrix indicating where to draw marks
markoob	mark out-of-bounds values
markshape	shape of cell marks
marksize	size of cell marks
na_col	color of NA values
maxchar	max. length of colnames/rownames
...

See Also

https://jokergoo.github.io/ComplexHeatmap-reference/book/

Examples

cxheatmap(rmat(50, 30), coldf = data.frame(row.names = colnames(rmat(50, 30)), group = sample(LETTERS[1:5], size = 30, replace = TRUE)))
cxheatmap(rmat(50, 30), border = c("black", 2))

AlexanderKirchmair/datamisc documentation built on June 13, 2025, 5:26 a.m.