find_markers: Find markers for groups in a Seurat object

In AlexanderKirchmair/datamisc: Various functions for data handling

Find markers for groups in a Seurat object

Description

Find markers for groups in a Seurat object

Usage

find_markers(
  seu,
  group_by = NULL,
  group_oi = NULL,
  group_ref = NULL,
  assay = NULL,
  slot = "data",
  logfc_thresh = 0.1,
  min_pct = 0.1,
  padj_thresh = 0.05,
  test_use = "wilcox",
  rename = TRUE,
  n_cores = 1,
  ...
)

Arguments

...

Examples

get_seu_dataset() |> find_markers(group_by = "seurat_annotations", logfc_thresh = 1, min_pct = 0.5, padj_thresh = 0.05)
get_seu_dataset() |> find_markers(group_by = "seurat_annotations", group_oi = "DC", group_ref = "NK")

AlexanderKirchmair/datamisc documentation built on June 13, 2025, 5:26 a.m.