getMSigDB: Get gene sets from msigdbr
In AlexanderKirchmair/datamisc: Various functions for data handling
View source: R/gene_functions.R
getMSigDB R Documentation
Get gene sets from msigdbr
Description
Get gene sets from msigdbr
Usage
getMSigDB(
collections = c("H", "C2|CP:KEGG"),
species = "human",
id_type = "gene_symbol",
format = c("list", "dataframe", "GeneSetCollection"),
...
)
Arguments
collections
Collections (msigdbr::msigdbr_collections()) and subcollections
format
Examples
getGeneSets(c("H", "C2|CP:KEGG|CP:REACTOME"))
AlexanderKirchmair/datamisc documentation built on June 13, 2025, 5:26 a.m.
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View source: R/gene_functions.R
| getMSigDB | R Documentation |
Get gene sets from msigdbr
Description
Get gene sets from msigdbr
Usage
getMSigDB(
collections = c("H", "C2|CP:KEGG"),
species = "human",
id_type = "gene_symbol",
format = c("list", "dataframe", "GeneSetCollection"),
...
)
Arguments
collections |
Collections (msigdbr::msigdbr_collections()) and subcollections |
format |
Examples
getGeneSets(c("H", "C2|CP:KEGG|CP:REACTOME"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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