In AliSajid/KINNET: Kinase INteraction NETwork Generation

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KINNET

This package provides the functionality to process PamGene's PamChip Data Output and generate kinase interaction networks from that.

This project uses a bayesian algorithm to generate bayesian networks for defining dependence relationships between peptide sequences in the PamChip data. It then uses a novel kinase assignment method to assign upstream kinases to each peptide which is then output as a graph.

Installation

You can install the released version of KINNET from CRAN with:

install.packages("KINNET")

You can install the latest development version of KINNET from Github with:

remotes::install_github("AliSajid/KINNET")

Example

This is a basic example which shows you how to solve a common problem:

#library(KINNET)
## basic example code

AliSajid/KINNET documentation built on Jan. 17, 2022, 8:54 a.m.